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Top Forums UNIX for Dummies Questions & Answers Matching numbers of characters in two lines Post 302503242 by DerSeb on Thursday 10th of March 2011 04:21:42 AM
Old 03-10-2011
Quote:
Originally Posted by royalibrahim
What does "2~4" in the above code signifies? I am damn sure it is not selecting lines from 2 to 4 when I tested it. It just process the 2nd line only.
No, it's not selecting lines 2 to 4.

It means start at line 2 (included) and from there select every fourth line. At least that's what I hope it does Smilie

Therefor it should process all lines that describe the ATGC sequence in my file.

---------- Post updated at 04:21 AM ---------- Previous update was at 04:15 AM ----------

Quote:
Originally Posted by yinyuemi
Hope this could help you,

Code:
awk 'NR%4==2{sub("T*|A*","");l=length($0)}NR%4==0{$0=substr($0,length($0)-l+1)}1' file

thanks, this works great!

Is it also possible to print only those sets of four lines where more that 15 Ts or As where deleted?
 

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PASTE(1)						    BSD General Commands Manual 						  PASTE(1)

NAME
paste -- merge corresponding or subsequent lines of files SYNOPSIS
paste [-s] [-d list] file ... DESCRIPTION
The paste utility concatenates the corresponding lines of the given input files, replacing all but the last file's newline characters with a single tab character, and writes the resulting lines to standard output. If end-of-file is reached on an input file while other input files still contain data, the file is treated as if it were an endless source of empty lines. The options are as follows: -d list Use one or more of the provided characters to replace the newline characters instead of the default tab. The characters in list are used circularly, i.e., when list is exhausted the first character from list is reused. This continues until a line from the last input file (in default operation) or the last line in each file (using the -s option) is displayed, at which time paste begins selecting characters from the beginning of list again. The following special characters can also be used in list: newline character tab character \ backslash character Empty string (not a null character). Any other character preceded by a backslash is equivalent to the character itself. -s Concatenate all of the lines of each separate input file in command line order. The newline character of every line except the last line in each input file is replaced with the tab character, unless otherwise specified by the -d option. If '-' is specified for one or more of the input files, the standard input is used; standard input is read one line at a time, circularly, for each instance of '-'. The paste utility exits 0 on success, and >0 if an error occurs. SEE ALSO
cut(1) STANDARDS
The paste utility is expected to be IEEE Std 1003.2 (``POSIX.2'') compatible. BSD
June 6, 1993 BSD
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