Replace a string within a file.. with help of positions Post: 302501507

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bio::map::linkageposition

Bio::Map::LinkagePosition(3pm)				User Contributed Perl Documentation			    Bio::Map::LinkagePosition(3pm)

NAME

       Bio::Map::LinkagePosition - Create a Position for a Marker that will be placed				   on a Bio::Map::LinkageMap

SYNOPSIS

	   use Bio::Map::Position;
	   my $position = Bio::Map::LinkagePosition->new(-positions => 1,
							-distance => 22.1 );

	       # can get listing of positions
	   my @positions = $position->each_position;

DESCRIPTION

       Position for a Bio::Map::MarkerI compliant object that will be placed on a Bio::Map::LinkageMap. See Bio::Map::MarkerI and
       Bio::Map::LinkageMap for details

FEEDBACK

   Mailing Lists
       User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
       Bioperl mailing list.  Your participation is much appreciated.

	 bioperl-l@bioperl.org			- General discussion
	 http://bioperl.org/wiki/Mailing_lists	- About the mailing lists

   Support
       Please direct usage questions or support issues to the mailing list:

       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
       it. Please include a thorough description of the problem with code and data examples if at all possible.

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the
       web:

	 https://redmine.open-bio.org/projects/bioperl/

AUTHOR - Chad Matsalla
       Email bioinformatics1@dieselwurks.com

CONTRIBUTORS

       Lincoln Stein, lstein@cshl.org Heikki Lehvaslaiho, heikki-at-bioperl-dot-org Jason Stajich jason@bioperl.org Sendu Bala bix@sendu.me.uk

APPENDIX

       The rest of the documentation details each of the object methods.  Internal methods are usually preceded with a _

   new
	Title	: new
	Usage	: my $obj = Bio::Map::LinkagePosition->new(-positions => $position,
									  -distance => $distance);
	Function: Builds a new Bio::Map::LinkagePosition object
	Returns : Bio::Map::LinkagePosition
	Args	: -order => the relative order of this marker on a linkage map
		      -positions => positions on a map

   Bio::Map::PositionI methods
   order
	Title	: order
	Usage	: $o_position->order($order)
		  my $order = $o_position->order()
	Function: get/set the order position of this position in a map
	Returns : int
	Args	: none to get, int to set

perl v5.14.2							    2012-03-02					    Bio::Map::LinkagePosition(3pm)