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Full Discussion: Understand a old unix shell script
Top Forums Shell Programming and Scripting Understand a old unix shell script Post 302495500 by kam786sim on Thursday 10th of February 2011 12:08:22 PM
Old 02-10-2011
Understand a old unix shell script
Hi All,
I have a unix old script i but i am not able to understand the few commands in it and what it does. below is the script.
Code:
 if [ -f /ITF_*.dat ];
  then 
     for F in $(find $DIR/. ! -name . -prune -name "DP_*.dat")  
    do
     IN=${F##/*/}
     OUT='ORD'$(echo $IN | cut -c7-)
    exec.ksh $IN $OUT
     if [ $? -ne 0 ]; then
       exit 1
     fi
   done

I am not able to understand what does this script code part does and also what does the below command does.
1. if [ -f /ITF_*.dat ];
2. IN=${F##/*/}

Can you please let me know.
 

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LEARN ABOUT SUNOS

unknown

UNKNOWN(1)						      General Commands Manual							UNKNOWN(1)

NAME

       unknown - identify possible genotypes for unknowns

SYNOPSIS

       A program to rapidly identify which genotypes are possible for individuals typed as unknowns in the input pedigree.

       unknown [ -cl ]

DESCRIPTION

       unknown infers possible genotypes and mating combinations for parents with unknown genotypes for ilink(1), mlink(1) and linkmap(1).

OPTIONS

       -c     Use conditional allele frequencies.

       -l     Choose a good set of loop breakers automatically.

RETURN VALUE

       0     Successful completion

ERRORS

       10    File not found
       255   Failure

EXAMPLES

       Normally, unknown(1) is run immediately prior to its sister programs, ilink(1), mlink(1) and linkmap(1), like this:

       unknown
       mlink

FILES

       unknown(1) reads the two files pedfile.dat and datafile.dat as its own input and produces various temporary files that are used as input to
       the next program. These temporary files are ipedfile.dat, upedfile.dat, speedfile.dat and newspeedfile.dat.

NOTES

       unknown(1) is part of the FASTLINK package, which is a re-implementation of the LINKAGE suite  of  computer  tools  that  help  investigate
       genetic linkage as first proposed G.M. Lathrop, J.M. Lalouel, C. Julier, and J. Ott.

AUTHORS

       Dylan Cooper, Alejandro Schaffer, and Tony Schurtz based on work originally by Jurg Ott, Ph.D, et. al.

       This manual page was written by Elizabeth Barham <lizzy@soggytrousers.net> for the Debian GNU/Linux system (but may be used by others).

WORD-WIDE-WEB
       http://www.ncbi.nlm.nih.gov/CBBResearch/Schaffer/fastlink.html

SEE ALSO

       ilink(1), linkmap(1), lodscore(1), mlink(1).

								  April 15, 2003							UNKNOWN(1)
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