Sorry, still inconsistent results with the whole dataset. I was trying to keep things simple with a small amount, but here's a much better dataset to work with:
Last edited by radoulov; 02-07-2011 at 12:30 PM..
Reason: Code tags, please!
I have a file with only one field something like this :
213.45
220.65
240.47
345.67
320.45
I want to remove all spaces in between. Is there any unix command for that ?Thanks in advance.. (2 Replies)
Hi all,
im a linux newbie, plz help!
I have a file -
box
--------
Fox-2
--------
UF29
zip42
--------
zf-CW
SNF2_N
Heli_Z
--------
Fox
--------
Kel_1
box (3 Replies)
If I have a data test.txt with 1000 columns such as:
id sex gene1 gene2 gene2.dl gene3 gene4 gene4.dl .......
1 1 AA AT AT TT AT AT .......
2 1 AG TT TT TA AA AA .......
3 2 AA AT AT TT AT ... (2 Replies)
Hello
i have a text file like this:
1 AB AC AD EE
2 WE TR YT WW
3 AS UY RF YT
the file is bigger , but that's an example of the data
what i want to do is to merge all columns together except the first one,
it will become like this :
1 ABACADEE
2 WETRYTWW
3 ASUYRFYT (8 Replies)
Hi. I am not sure the title gives an optimal description of what I want to do.
I have several text files that contain data in many columns. All the files are organized the same way, but the data in the columns might differ. I want to count the number of times data occur in specific columns,... (0 Replies)
Hi guru's,
I am trying to write a script to generate a csv file by connecting to database run a query and put the values into csv file.
But the problem i face is i am getting lot of space after one value.how can i remove those values?.
Please help.
#!/bin/bash
export... (2 Replies)
I have a file like:
s_20331 803 1 1 5 1:2=0.00000000 1:3=0.00000000 1:4=0.11111111
s_20331 814 1 1 5 1:2=0.00000000 1:3=0.12611607 1:4=0.00000000I would like to remove the four characters "x:x=" from all columns containing them (in my actual file, there are 15 total columns (i.e. columns... (1 Reply)
Hello,
I have two tab delimited text files. Both files have the same number of rows but not necessarily the same number of columns. The column headers look like,
File 1:
f0order CVorder Name f0 RI_9 E99 E199 E299 E399 E499 E599 E699 E799 E899 E999
File 2:... (9 Replies)
Hi,
I've a requirement like, in a csv file of 30+ fields where all the columns are having double quotes I need to remove the double quotes from certain fields and certain field should remain as it is.
Eg:... (6 Replies)
Discussion started by: Krishnanth S
6 Replies
LEARN ABOUT DEBIAN
h5totxt
H5TOTXT(1) h5utils H5TOTXT(1)NAME
h5totxt - generate comma-delimited text from 2d slices of HDF5 files
SYNOPSIS
h5totxt [OPTION]... [HDF5FILE]...
DESCRIPTION
h5totxt is a utility to generate comma-delimited text (and similar formats) from one-, two-, or more-dimensional slices of numeric datasets
in HDF5 files. This way, the data can easily be imported into spreadsheets and similar programs for analysis and visualization.
HDF5 is a free, portable binary format and supporting library developed by the National Center for Supercomputing Applications at the Uni-
versity of Illinois in Urbana-Champaign. A single h5 file can contain multiple data sets; by default, h5totxt takes the first dataset, but
this can be changed via the -d option, or by using the syntax HDF5FILE:DATASET.
By default, the entire dataset is dumped to the output. in row-major order. For 3d datasets, this corresponds to a sequence of yz slices,
in order of increasing x, separated by blank lines. If -T is specified, outputs in the transposed (column-major) order instead
Often, however, you want only a one- or two-dimensional slice of multi-dimensional data. To do this, you specify coordinates in one or
more slice dimensions, via the -xyzt options.
The most basic usage is something like 'h5totxt foo.h5', which will output comma-delimited text to stdout from the data in foo.h5.
OPTIONS -h Display help on the command-line options and usage.
-V Print the version number and copyright info for h5totxt.
-v Verbose output.
-o file
Send text output to file rather than to stdout (the default).
-s sep Use the string sep to separate columns of the output rather than a comma (the default).
-x ix, -y iy, -z iz, -t it
This tells h5totxt to use a particular slice of a multi-dimensional dataset. e.g. -x causes a yz plane (of a 3d dataset) to be
used, at an x index of ix (where the indices run from zero to one less than the maximum index in that direction). Here, x/y/z cor-
respond to the first/second/third dimensions of the HDF5 dataset. The -t option specifies a slice in the last dimension, whichever
that might be. See also the -0 option to shift the origin of the x/y/z slice coordinates to the dataset center.
-0 Shift the origin of the x/y/z slice coordinates to the dataset center, so that e.g. -0 -x 0 (or more compactly -0x0) returns the
central x plane of the dataset instead of the edge x plane. (-t coordinates are not affected.)
-T Transpose the data (interchange the dimension ordering). By default, no transposition is done.
-. numdigits
Output numdigits digits after the decimal point (defaults to 16).
-d name
Use dataset name from the input files; otherwise, the first dataset from each file is used. Alternatively, use the syntax
HDF5FILE:DATASET, which allows you to specify a different dataset for each file. You can use the h5ls command (included with hdf5)
to find the names of datasets within a file.
BUGS
Send bug reports to S. G. Johnson, stevenj@alum.mit.edu.
AUTHORS
Written by Steven G. Johnson. Copyright (c) 2005 by the Massachusetts Institute of Technology.
h5utils March 9, 2002 H5TOTXT(1)