Sponsored Content
Top Forums UNIX for Dummies Questions & Answers Probably some stupid mistake... Post 302491722 by sluvah on Friday 28th of January 2011 06:09:37 AM
Old 01-28-2011
[solved]Probably some stupid mistake...

Hi everyone !

I have a file wich look like this :

>Sis01
[lots of ATCG stuff]

> Sis02
[lots of ATCG stuff]

...

>Sis44
[lots of ATCG stuff]


I want to separe each paragraphe in a different file, so I decide to use the "FOR" loop + sed.

Code:
for f in {01..44}
do
(
   sed -n '/^>Sis `echo $f'/,/^>/p' Sis_110125.fasta | sed '$d' > Sis_110125_contig`echo $f`
)
done

I get empty files, i think due to the space between ^> and the echoed $f


I try a lot of thing, but I was unable to find a solution !

Thanks for your help !

Last edited by sluvah; 01-28-2011 at 02:10 PM.. Reason: Solved
 

8 More Discussions You Might Find Interesting

1. UNIX for Dummies Questions & Answers

Crontab Mistake!!!

Hi. I hope someone can help me with this problem. Being a novice to Unix, I editted my crontab directly by typing " crontab -e ". Well, I needed to make some changes so, I typed " crontab -r ". Now I have no crontab, and I can't seem to get crontab to write a new file. I' ve tried: vi... (4 Replies)
Discussion started by: cstovall
4 Replies

2. AIX

Did a Mistake with HACMP

Hi, I needed space on a FS, and when I've added the space on the filesystem, I did it trough the regular smitty fs inteface and not with smitty cl_lvm. Can someone help me to repair the situat before a faileover happen ? Thanks for your help,:mad: (13 Replies)
Discussion started by: azzed27
13 Replies

3. Shell Programming and Scripting

Is there any mistake in this code:

cat $1 | sort -n | uniq | $1 in other words, I sort the content of the file and put the ouput in the same file, is there any mistakes in this cshell code ??? (4 Replies)
Discussion started by: Takeeshe
4 Replies

4. Solaris

Renamed lib directory by mistake

Let's say someone accidentally renamed the lib directory in Solaris 8, and now they cannot get into the terminal or even rename the folder via file manager.What would one do? (37 Replies)
Discussion started by: jetjaguar
37 Replies

5. Red Hat

Changing Desktop Environment by mistake

Hi, I'm using fedora 15, my defualt DE is XFCE I once saw that there is a option in startup DE's that I can select and it was OPENBOX. I just wanted to test it. but after choosing it as my DE here I am. I have just access to terminal, firefox.. what's in my desktop. there is no panel here. I... (0 Replies)
Discussion started by: hoseinit
0 Replies

6. Shell Programming and Scripting

Can anyone find the mistake in this script file

#!/bin/ksh db_user=`echo $DB_USER_NAME` db_pwd=`echo $DB_PASSWORD` db_sid=`echo $TWO_TASK` sqlplus -s $db_user/$db_pwd@$db_sid << EOF a = select ACK_PARTY_NAME,bus_event_seq_nbr from bus_event where ack_party_name like 'MOVE_USAGE_DAEMON%' and bus_event_seq_nbr='3969094' set -- echo $a |... (17 Replies)
Discussion started by: rkrish
17 Replies

7. UNIX for Dummies Questions & Answers

Can anyone help me to spot my mistake?

Hi there can anyone help me to spot my mistake and please explain why it appears My code : #!/usr/bin/gawk -f BEGIN { bytes =0} { temp=$(grep "datafeed\.php" | cut -d" " -f8) bytes += temp} END { printf "Number of bytes: %d\n", bytes } when I am running ./q411 an411 an411: ... (6 Replies)
Discussion started by: FUTURE_EINSTEIN
6 Replies

8. Shell Programming and Scripting

Strange type mistake?!

Hi, I want to start MY_PROGRAM in a bash script with additional parameters given in the CONFIGURATION_ARRAY. IFS="'" CONFIGURATION_ARRAY=( '-N 0 -m 0' '-N 0 -m 1' ) for configuration in ${CONFIGURATION_ARRAY} do //DEBUG N=${configuration%-*} //-N 0 M=-${configuration##*-} //-m 0... (5 Replies)
Discussion started by: xraystorm
5 Replies
SAFE_FINGER(8)						     Linux Programmer's Manual						    SAFE_FINGER(8)

NAME
safe_finger - finger client wrapper that protects against nasty stuff from finger servers SYNOPSIS
safe_finger [finger_options] DESCRIPTION
The safe_finger command protects against nasty stuff from finger servers. Use this program for automatic reverse finger probes from the tcp_wrapper (tcpd) , not the raw finger command. The safe_finger command makes sure that the finger client is not run with root privileges. It also runs the finger client with a defined PATH environment. safe_finger will also protect you from problems caused by the output of some finger servers. The problem: some programs may react to stuff in the first column. Other programs may get upset by thrash anywhere on a line. File systems may fill up as the finger server keeps sending data. Text editors may bomb out on extremely long lines. The finger server may take forever because it is somehow wedged. safe_finger takes care of all this badness. SEE ALSO
hosts_access(5), hosts_options(5), tcpd(8) AUTHOR
Wietse Venema, Eindhoven University of Technology, The Netherlands. Linux 21th June 1997 SAFE_FINGER(8)
All times are GMT -4. The time now is 06:52 PM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy