01-25-2011
Then I don't get what you're asking for.
9 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
Hi
I want to compare a string at fixed position 10-20 for all the lines starting with 6. if they dont match it should take a copy of a line starting with 1 and insert it before the line starting with 6. How do i this? Please help
Eg
1 test 1 765533 7643743
6 yes 3 5363653 373833
7... (9 Replies)
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2. Shell Programming and Scripting
I have a file with data extracted, and need to insert a header with a constant string, say: H|PayerDataExtract
if i use sed, i have to redirect the output to a seperate file like
sed ' sed commands' ExtractDataFile.dat > ExtractDataFileWithHeader.dat
the same is true for awk
and... (10 Replies)
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3. Shell Programming and Scripting
i need to compare three files in unix
a.txt b.txt c.txt
1 2 1
2 5 3
4 6 5
5 6
6
i need to insert a blank line in the file if i don't find a match
and put the items at the same column if found a match
The items in the files... (4 Replies)
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4. UNIX for Dummies Questions & Answers
Hi,
I am new to shell scripting. I need a bash shell scripts which search and grep a parameter value from input.txt file and insert it in between two semicolon of second line of output.txt file.
For example
The shell script search an IP address as parameter value from input.txt ... (2 Replies)
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5. Shell Programming and Scripting
Hi Friends,
I'm a great fan of this forum... it has helped me tone my skills in shell scripting. I have a challenge here, which I'm sure you guys would help me in achieving...
File A has a list of job ids and I need to compare this with the File B (*.log) and File C (extend *.log) and copy... (6 Replies)
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6. Shell Programming and Scripting
Hi friends, here is my problem.
I have three files like this..
cat file1.txt
=======
unix is best
unix is best
linux is best
unix is best
linux is best
linux is best
unix is best
unix is best
cat file2.txt
========
Windows performs better
Mac OS performs better
Windows... (4 Replies)
Discussion started by: Jagadeesh Kumar
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7. Shell Programming and Scripting
Hi all,
I'm new to scripting.. facing some problems while inserting content of a file into another file...
I want to insert content of a file (file2) into file1, before first occurrence of "line starts with pattern" in file1
file1
======
working on linux
its unix world
working on... (14 Replies)
Discussion started by: Jagadeesh Kumar
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8. UNIX for Beginners Questions & Answers
Hi ,
I'm looking for some code that can copy and paste form file1 to file2 with 2 criterial meet.
file1:
test "sp-j1"
test "sp-j2"
test "sp-j3"
test "sp-j4"
file2:
sub Pre_Shorts1 (Status_Code, Message$)
global Status
!if Message$ <> "" then print... (3 Replies)
Discussion started by: kttan
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9. Shell Programming and Scripting
Shell script logic
Hi
I have 2 input files like with file 1 content as (file1)
"BRGTEST-242" a.txt "BRGTEST-240" a.txt "BRGTEST-219" e.txt
File 2 contents as fle(2)
"BRGTEST-244" a.txt "BRGTEST-244" b.txt "BRGTEST-231" c.txt "BRGTEST-231" d.txt "BRGTEST-221" e.txt
I want to get... (22 Replies)
Discussion started by: pottic
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LEARN ABOUT DEBIAN
vcf-compare
VCF-COMPARE(1) User Commands VCF-COMPARE(1)
NAME
vcf-compare - compare bgzipped and tabix indexed VCF files
SYNOPSIS
compare-vcf [OPTIONS] file1.vcf file2.vcf ...
DESCRIPTION
About: Compare bgzipped and tabix indexed VCF files. (E.g. bgzip file.vcf; tabix -p vcf file.vcf.gz)
OPTIONS
-c, --chromosomes <list|file>
Same as -r, left for backward compatibility. Please do not use as it will be dropped in the future.
-d, --debug
Debugging information. Giving the option multiple times increases verbosity
-H, --cmp-haplotypes
Compare haplotypes, not only positions
-m, --name-mapping <list|file>
Use with -H when comparing files with differing column names. The argument to this options is a comma-separated list or one mapping
per line in a file. The names are colon separated and must appear in the same order as the files on the command line.
-R, --refseq <file>
Compare the actual sequence, not just positions. Use with -w to compare indels.
-r, --regions <list|file>
Process the given regions (comma-separated list or one region per line in a file).
-s, --samples <list>
Process only the listed samples. Excluding unwanted samples may increase performance considerably.
-w, --win <int>
In repetitive sequences, the same indel can be called at different positions. Consider records this far apart as matching (be it a
SNP or an indel).
-h, -?, --help
This help message.
vcf-compare 0.1.5 July 2011 VCF-COMPARE(1)