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Full Discussion: Need to Split the file
Top Forums Shell Programming and Scripting Need to Split the file Post 302486713 by anurag.singh on Monday 10th of January 2011 06:11:22 AM
Old 01-10-2011
For input
Code:
vst_qp_vds_Fido_VT0220101029.txt
Active
 
vst_fact_cms_purchase_trans_20101015.dat
Active
 
vst_soc_activity_detail2_VT0120101028.dat
Active
 
vst_fact_api_cdr_VT0320101029.csv
Active

I get following as output:
Code:
vst_qp_vds_Fido_VT0220101029.txt,Active
vst_fact_cms_purchase_trans_20101015.dat,Active
vst_soc_activity_detail2_VT0120101028.dat,Active
vst_fact_api_cdr_VT0320101029.csv,Active

If you don't get this, then your input file may be little different. Please post that.
I assume that,
very 1st line is file name, next line is Active
3rd is empty.
4th line is file name, next line is Active

If your input file is OK, then please verify the command you are trying, if no clue, Please post the command you are trying.
This User Gave Thanks to anurag.singh For This Post:
rsivasan
 

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LEARN ABOUT DEBIAN

re-pcr

RE-PCR(1)						      General Commands Manual							 RE-PCR(1)

NAME

       re-PCR -- Find sequence tagged sites (STS) in DNA sequences

SYNOPSIS

       re-PCR [-hV] -p hash-file [-g gaps] [-n mism] [-lq] [primer ...]

       re-PCR [-hV] -P hash-file [-g gaps] [-n mism] [-l] [-m margin] [-O+|-] [-C batchcnt] [-o outfile] [-r+|-] [primers-file ...]

       re-PCR [-hV] -s hash-file [-g gaps] [-n mism] [-lq] [-m margin] [-o outfile] [-r+|-] [left right lo[-hi] [...]]

       re-PCR [-hV] -S hash-file [-g gaps] [-n mism] [-lq] [-m margin] [-O+|-] [-C batchcnt] [-o outfile] [-r+|-] [stsfile ...]

DESCRIPTION

       Implements reverse searching (called Reverse e-PCR) to make it feasible to search the human genome sequence and other large genomes by per-
       forming STS and primer searches.

OPTIONS

       -p=hash-file
		 Perform primer lookup using hash-file

       -P=hash-file
		 Perform primer lookup using hash-file

       -s=hash-file
		 Perform STS lookup using hash-file

       -S=hash-file
		 Perform STS lookup using hash-file

       -n=mism	 Set max allowed mismatches per primer for lookup

       -g=gaps	 Set max allowed indels per primer for lookup

       -m=margin Set variability for STS size for lookup

       -l	 Use presize alignments (only if gaps>0)

       -G	 Print alignments in comments

       -d=min-max
		 Set default STS size

       -r=+|-	 Enable/disable reverse STS lookup

       -O=+|-	 Enable/disable syscall optimisation

       -C=batchcnt
		 Set number of STSes per batch

       -o=outfile
		 Set output file name

       -q	 Quiet (no progress indicator)

EXAMPLE

	famap -tN -b genome.famap org/chr_*.fa

	fahash -b genome.hash -w 12 -f3 ${PWD}/genome.famap

	re-PCR -s genome.hash -n1 -g1 ACTATTGATGATGA AGGTAGATGTTTTT 120-200

       See famap(1) and fahash(1)

SEE ALSO

       /usr/share/doc/ncbi-epcr/README.txt

       bioperl(1), e-pcr(1), famap(1) and fahash(1)

AUTHORS

       This manual page was written by Andreas Tille <tille@debian.org> for the Debian system (but may be used by others).  Permission is  granted
       to copy, distribute and/or modify this document under the terms of the GNU General Public License, Version 2 any later version published by
       the Free Software Foundation.

       On Debian systems, the complete text of the GNU General Public License can be found in /usr/share/common-licenses/GPL.

								    April 2008								 RE-PCR(1)
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