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Top Forums Shell Programming and Scripting Sorting with header and mixed numerals (scientific and decimal) | awk Post 302485206 by genehunter on Tuesday 4th of January 2011 01:58:40 PM
Old 01-04-2011
Quote:
Originally Posted by vgersh99
try this:
Code:
nawk 'FNR==1{print | "cat 1>&2";next}$5=="ADD" {print $0}' OFS='\t'  Assoc.txt |sort -nrk9

Code:
awk 'FNR==1{print | "cat 1>&2";next}$5=="ADD" {print $0}' OFS='\t'  Assoc.txt  |sort -gk9 >Assoc_sorted.TXT

Code:
CHR         SNP         BP   A1       TEST    NMISS         OR         STAT            P 
FL_NoOutlr :~>head Foll_LRM_Sorted.TXT
   6   rs4530903   32689867    A        ADD     4151      2.084        5.538    3.067e-08
   6   rs9268853   32537621    C        ADD     4182      1.749        5.335    9.552e-08
   6   rs9469220   32766288    C        ADD     4164     0.5633       -5.237    1.628e-07

What happens is that it prints the header on to the terminal and the rest is piped out to the file output.
Also found out that -gk9 works for scientific notation. -nrk9 did not work as expected.
 

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ALTER 
SERVER(7) SQL Commands ALTER SERVER(7) NAME
ALTER SERVER - change the definition of a foreign server SYNOPSIS
ALTER SERVER servername [ VERSION 'newversion' ] [ OPTIONS ( [ ADD | SET | DROP ] option ['value'] [, ... ] ) ] ALTER SERVER servername OWNER TO new_owner DESCRIPTION
ALTER SERVER changes the definition of a foreign server. The first form changes the server version string or the generic options of the server (at least one clause is required). The second form changes the owner of the server. To alter the server you must be the owner of the server. Additionally to alter the owner, you must own the server and also be a direct or indirect member of the new owning role, and you must have USAGE privilege on the server's foreign-data wrapper. (Note that superusers sat- isfy all these criteria automatically.) PARAMETERS
servername The name of an existing server. serverversion New server version. OPTIONS ( [ ADD | SET | DROP ] option ['value'] [, ... ] ) Change options for the server. ADD, SET, and DROP specify the action to be performed. ADD is assumed if no operation is explicitly specified. Option names must be unique; names and values are also validated using the server's foreign-data wrapper library. EXAMPLES
Alter server foo, add connection options: ALTER SERVER foo OPTIONS (host 'foo', dbname 'foodb'); Alter server foo, change version, change host option: ALTER SERVER foo VERSION '8.4' OPTIONS (SET host 'baz'); COMPATIBILITY
ALTER SERVER conforms to ISO/IEC 9075-9 (SQL/MED). SEE ALSO
CREATE SERVER [create_server(7)], DROP SERVER [drop_server(7)] SQL - Language Statements 2010-05-14 ALTER SERVER(7)
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