01-04-2011
Code for one array
Many thanks Radoulov,
the following code is working well:
Quote:
#!/usr/bin/perl
use warnings;
use strict;
my @arrys = (
[ qw( 44 44 44 44 ) ],
[ qw( 55 55 55 55 55 55 56 ) ],
);
for my $arry (@arrys) {
my %h;
$h{$_} = undef for @$arry;
if (keys %h > 1) {
print "@$arry is not OK\n"
}
else {
print "@$arry is OK\n";
}
}
Could you please provide the code for only one array?
Thanks in advance.
10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
I am trying to use a script to replace the header of each file, whose filename are stored within the array $test, using the sed command within a Perl script as follows:
$count = 0;
while ( $count < $#test )
{
`sed -e 's/BIOGRF 321/BIOGRF 332/g' ${test} > 0`;
`cat 0 >... (2 Replies)
Discussion started by: userix
2 Replies
2. Shell Programming and Scripting
Hi,
can I use array elements ( all ) in conditional statements?
the problem is ,the total number of elements is not known.
e.g
A is an array with elements - 1,2,3
now if i want to test if the 1 st field of input record is either 1,2 or 3, i can do something like this
if ( $1 ~... (1 Reply)
Discussion started by: shellwell
1 Replies
3. Shell Programming and Scripting
Hi,
Is there any way I can grep an array against another array?
Basically here's what I need to do.
There will be an array containing some fixed texts and I have to check whether some files contain these lines. Reading the same files over and over again for each different pattern doesnt seem... (1 Reply)
Discussion started by: King Nothing
1 Replies
4. Shell Programming and Scripting
Hi,
I want to check a particular string inserted by User to be checked against the values i already have in a ARRAY string using IF condition. Is this possible? if yes how to do that.
example :
i have a,b,c,d,e,f values in a array called values
i asked user to enter a value:
user entered... (2 Replies)
Discussion started by: kukretiabhi13
2 Replies
5. Shell Programming and Scripting
Hi Everyone,
#!/usr/bin/perl
use strict;
use warnings;
my @test=("a;b;qqq;c;d","a;b;ggg;c;d","a;b;qqq;c;d");
would like to split the @test array into two array:
@test1=(("a;b;qqq;c;d","a;b;qqq;c;d"); and @test2=("a;b;ggg;c;d");
means search for 3rd filed.
Thanks
find the... (0 Replies)
Discussion started by: jimmy_y
0 Replies
6. Shell Programming and Scripting
Hi everyone
I have one question about using array in perl. let say I have several log file in one folder.. example
test1.log
test2.log
test3.log
and the list goes on..
how to make an array for this file? It suppose to detect log file in the current directory and all the log file will... (3 Replies)
Discussion started by: sayachop
3 Replies
7. Shell Programming and Scripting
I have an array and two variables as below,
I need to check if $datevar is present in $filename.
If so, i need to replace $filename with the values in the array.
I need the output inside an ARRAY
How can this be done.
Any help will be appreciated. Thanks in advance. (2 Replies)
Discussion started by: irudayaraj
2 Replies
8. Shell Programming and Scripting
Hi all,
Not sure if this should be in the programming forum, but I believe it will get more response under the Shell Programming and Scripting FORUM.
Am trying to write a customized df script in Perl and need some help with regards to using arrays and file handlers.
At the moment am... (3 Replies)
Discussion started by: newbie_01
3 Replies
9. Shell Programming and Scripting
I want to build an Errorlog. I would like to build an array as I move through the if statements and print the array once all error conditions have been defined. The results need to be comma delimited.
tsver will be static "1.9.6(2)"
other vars $prit $lt $rt can have the same or a different... (1 Reply)
Discussion started by: popeye
1 Replies
10. UNIX for Dummies Questions & Answers
hi,
say if my array has the following integer values.array=( 5 10 15 20 )and A assigns to 5.A=5How do I if condition to check against if value A is in this array or not, in shell script?
thx (5 Replies)
Discussion started by: martin5kh
5 Replies
LEARN ABOUT DEBIAN
re-pcr
RE-PCR(1) General Commands Manual RE-PCR(1)
NAME
re-PCR -- Find sequence tagged sites (STS) in DNA sequences
SYNOPSIS
re-PCR [-hV] -p hash-file [-g gaps] [-n mism] [-lq] [primer ...]
re-PCR [-hV] -P hash-file [-g gaps] [-n mism] [-l] [-m margin] [-O+|-] [-C batchcnt] [-o outfile] [-r+|-] [primers-file ...]
re-PCR [-hV] -s hash-file [-g gaps] [-n mism] [-lq] [-m margin] [-o outfile] [-r+|-] [left right lo[-hi] [...]]
re-PCR [-hV] -S hash-file [-g gaps] [-n mism] [-lq] [-m margin] [-O+|-] [-C batchcnt] [-o outfile] [-r+|-] [stsfile ...]
DESCRIPTION
Implements reverse searching (called Reverse e-PCR) to make it feasible to search the human genome sequence and other large genomes by per-
forming STS and primer searches.
OPTIONS
-p=hash-file
Perform primer lookup using hash-file
-P=hash-file
Perform primer lookup using hash-file
-s=hash-file
Perform STS lookup using hash-file
-S=hash-file
Perform STS lookup using hash-file
-n=mism Set max allowed mismatches per primer for lookup
-g=gaps Set max allowed indels per primer for lookup
-m=margin Set variability for STS size for lookup
-l Use presize alignments (only if gaps>0)
-G Print alignments in comments
-d=min-max
Set default STS size
-r=+|- Enable/disable reverse STS lookup
-O=+|- Enable/disable syscall optimisation
-C=batchcnt
Set number of STSes per batch
-o=outfile
Set output file name
-q Quiet (no progress indicator)
EXAMPLE
famap -tN -b genome.famap org/chr_*.fa
fahash -b genome.hash -w 12 -f3 ${PWD}/genome.famap
re-PCR -s genome.hash -n1 -g1 ACTATTGATGATGA AGGTAGATGTTTTT 120-200
See famap(1) and fahash(1)
SEE ALSO
/usr/share/doc/ncbi-epcr/README.txt
bioperl(1), e-pcr(1), famap(1) and fahash(1)
AUTHORS
This manual page was written by Andreas Tille <tille@debian.org> for the Debian system (but may be used by others). Permission is granted
to copy, distribute and/or modify this document under the terms of the GNU General Public License, Version 2 any later version published by
the Free Software Foundation.
On Debian systems, the complete text of the GNU General Public License can be found in /usr/share/common-licenses/GPL.
April 2008 RE-PCR(1)