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Top Forums Shell Programming and Scripting Matching 2 files based on one column Post 302470989 by swvanderlaan on Thursday 11th of November 2010 04:04:28 PM
Old 11-11-2010
Matching 2 files based on one column

Hi,

On a similar subject, the following. I have two files:

file1.txt
Code:
dbSNP_rsID,Chromosome,Position,Gene
rs10399749,chr. 01,45162,?
rs4030303,chr. 01,72434,?
rs4030300,chr. 01,72515,?
rs940550,chr. 01,78032,?
rs13328714,chr. 01,81468,?
rs11490937,chr. 01,222077,?
rs6683466,chr. 01,524446,"OR4F29, OR4F16, OR4F3"
rs12025928,chr. 01,536560,"OR4F29, OR4F16, OR4F3"

file2.txt
Code:
dbSNP_rsID	R_square
rs6650104	0.000
rs9629043	0.000
rs11497407	0.000
rs12565286	0.332
rs11804171	0.338
rs2977670	0.352
rs2977656	0.000

And now I would like to match the files (file1 to file2) on dbSNP_rsID so that I get a new file:

file_new.txt
dbSNP_rsID,R_square,Chromosome,Position,Gene
rs12565286,0.332,chr. 01,711153,"OR4F29, OR4F16, OR4F3"


I've really tried to understand the code you guys have supplied, but I really don't understand. SmilieCould you please help me with a code? Smilie

Thanks!

Sander

Last edited by Franklin52; 11-12-2010 at 05:44 AM.. Reason: Please use code tags!
 

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GRI_MERGE(1)						      General Commands Manual						      GRI_MERGE(1)

NAME
gri_merge - merge multiple Gri output files into a single PostScript file. USAGE (style 1): gri_merge [OPTIONS] CxR a.ps b.ps ... > merged_file.ps Merges the files onto one page, in 'C' columns and 'R' rows. The CxR files are given in the order of words on a page. The page is pre- sumed to be 8.5x11in in size, as are all the input files, and the input files are sized to fit, and kept in natural scale. USAGE (style 2): gri_merge [OPTIONS] xcm ycm enlarge a.ps [b.ps ...] > merged_file.ps Where `enlarge' is a scale factor applied after offsetting `xcm' to the right and `ycm' upward. EXAMPLE (style 2): The following gri_merge 2 12 .5 a.ps 12 12 .5 b.ps 2 2 .5 c.ps 12 2 .5 d.ps > all.ps produces 4 panels from gri plots done using margins and sizes as specified in the following lines in a gri commandfile set x margin 2 set x size 15 set y margin 2 set y size 15 The OPTIONS, available if your 'perl' has 'getopts' library, are: -u graylevel -- set graylevel for underlay beneath panels, by default 0.75. Values range from 0 (black) to 1 (white), although a value of precisely 1 means do NOT draw underlay. -b graylevel -- Set value for background under individual panels, again 0 for black to 1 for white, with 1 meaning no drawing. -h -- Print this help message and quit. SEE ALSO
gri(1), gri_unpage(1) gri_merge 2009 GRI_MERGE(1)
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