Login or Register to Ask a Question and Join Our Community

Sponsored Content
Full Discussion: Shell scripting : pls help me
Top Forums Shell Programming and Scripting Shell scripting : pls help me Post 302460830 by hravisankar on Thursday 7th of October 2010 03:53:17 PM
Old 10-07-2010
Reading input line problem
Thank u very much for your reply. I used as u specified "$line" in samtools command like samtools faidx Bos_taurusUMD3.fa "$line";

It is giving out like this. Sequence was not given. it displays it as > only.

Chr8:86884850-86884997
>
ChrX:96383583-96383703
>
Chr15:33347613-33347720
>
~
Kindly help me how to execute that to generate the sequence.
 

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

scripting guru's pls help me with scripting on AIX

can someone pls help me with the script for a files coming from one system to a particular directory and i want to write a script to move those files to another directory on different system by renaming the files... pls someone help me on this... thanking in anticipation.... (1 Reply)
Discussion started by: thatiprashant
1 Replies

2. Shell Programming and Scripting

difference between AIX shell scripting and Unix shell scripting.

please give the difference between AIX shell scripting and Unix shell scripting. (2 Replies)
Discussion started by: haroonec
2 Replies

3. Shell Programming and Scripting

HELP me PLS... Simple Scripting!

this is my script.... SQL> select * from dba_profiles 2 where resource_name in ('FAILED_LOGIN_ATTEMPTS','PASSWORD_LOCK_TIME') 3 order by profile; and this is the output... PROFILE RESOURCE_NAME RESOURCE... (2 Replies)
Discussion started by: liezer
2 Replies

4. Shell Programming and Scripting

HELP PLS!! Shell Scripting!!

Dear All, forgive me as i am a complete beginner in shell scripting in UNIX. I have a file with data similair to the following 8 McDonalds Sandwich 1.99 9 Mcdonalds Fries 1.20 13 McDonalds Milkshake 1.20 7 ... (9 Replies)
Discussion started by: Mary_xxx
9 Replies

5. Shell Programming and Scripting

hi..all..pls...help..!!..profile scripting..

hi.. I want to customize a user in unix which could have only ftp access and NO TELNET ACCESS! ..... As being a newbie to unix to my understanding the user .profile has to be edited but if someone can explain how to edit it so that i can block telnet access for that user.....Is /etc/profile has... (5 Replies)
Discussion started by: rookie250
5 Replies

6. UNIX for Advanced & Expert Users

pls help me in scripting

i want to write a script that if the time is 8 then it give a message that the time is 8 and if it is 9-10 then it gives a message that time to go to office like that. can any one help me? (3 Replies)
Discussion started by: lakshmananindia
3 Replies

7. Shell Programming and Scripting

shell script, pls help

# for i in `cat oo`;do ls -ld $i;done ls: /var/tmp/i: No such file or directory ls: i: No such file or directory ls: /var/tmp/ii: No such file or directory ls: i: No such file or directory ls: /var/tmp/iii: No such file or directory ls: i: No such file or directory ls: /var/tmp/iiii: No such... (2 Replies)
Discussion started by: cpttak
2 Replies

8. Shell Programming and Scripting

scripting/awk help : awk sum output is not comming in regular format. Pls advise.

Hi Experts, I am adding a column of numbers with awk , however not getting correct output: # awk '{sum+=$1} END {print sum}' datafile 2.15291e+06 How can I getthe output like : 2152910 Thank you.. # awk '{sum+=$1} END {print sum}' datafile 2.15079e+06 (3 Replies)
Discussion started by: rveri
3 Replies

9. Shell Programming and Scripting

Shell program help pls

first queestion if what does "-s" mean? second seqx -n 10000000 -c 10 < $seqfile >$temp seqx? -n? -c? what do these mean? third if && ! cmp -s $missing $temp explain these codes ty (2 Replies)
Discussion started by: imtheone
2 Replies

10. Shell Programming and Scripting

Need help with first shell script pls.

Hi, I'm trying to extract information from one file to update another one and am a bit stuck. the first file is made up of tags e.g. <item>a@b.com</item> jksdhfjkdsh sldkjfds l klsjdf <item> c@d.com </item> what i'd like to do is extract the email addresses between these tags,... (6 Replies)
Discussion started by: newb1000
6 Replies

LEARN ABOUT SUSE

platform::shell

platform::shell(n)					       Tcl Bundled Packages						platform::shell(n)

__________________________________________________________________________________________________________________________________________________

NAME

       platform::shell - System identification support code and utilities

SYNOPSIS

       package require platform::shell ?1.1.4?

       platform::shell::generic shell
       platform::shell::identify shell
       platform::shell::platform shell
_________________________________________________________________

DESCRIPTION

       The platform::shell package provides several utility commands useful for the identification of the architecture of a specific Tcl shell.

       This  package  allows the identification of the architecture of a specific Tcl shell different from the shell running the package. The only
       requirement is that the other shell (identified by its path), is actually executable on the current machine.

       While for most platform this means that the architecture of the interrogated shell is identical to the architecture of  the  running  shell
       this  is  not generally true. A counter example are all platforms which have 32 and 64 bit variants and where a 64bit system is able to run
       32bit code. For these running and interrogated shell may have different 32/64 bit settings and thus different identifiers.

       For applications like a code repository it is important to identify the architecture of the shell which will  actually  run  the  installed
       packages, versus the architecture of the shell running the repository software.

COMMANDS

       platform::shell::identify shell
	      This command does the same identification as platform::identify, for the specified Tcl shell, in contrast to the running shell.

       platform::shell::generic shell
	      This command does the same identification as platform::generic, for the specified Tcl shell, in contrast to the running shell.

       platform::shell::platform shell
	      This command returns the contents of tcl_platform(platform) for the specified Tcl shell.

KEYWORDS

       operating system, cpu architecture, platform, architecture

platform::shell 						       1.1.4							platform::shell(n)
All times are GMT -4. The time now is 11:42 PM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy