09-27-2010
Thanks again, rdcwayx
Your awk command work perfectly in my case ^^
---------- Post updated at 10:47 PM ---------- Previous update was at 10:43 PM ----------
Hi alister,
sed command seems like can't work in this situation?
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1. Shell Programming and Scripting
My input:
Data name: ABC001
Data length: 1000
Detail info
Data Direction Start_time End_time Length
1 forward 10 100 90
1 forward 15 200 185
2 reverse 50 500 450
Data name: XFG110
Data length: 100
Detail info
Data Direction Start_time End_time Length
1 forward 50 100 50 ... (11 Replies)
Discussion started by: patrick87
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2. Shell Programming and Scripting
Input file 1:
>pattern_5
GAATTCGTTCATGTAGGTTGASDASFGDSGRTYRYGHDGSDFGSDGGDSGSDGSDFGSDF
ATTTAATTATGATTCATACGTCATATGTTATTATTCAATCGTATAAAATTATGTGACCTT
SDFSDGSDFKSDAFLKJASLFJASKLFSJAKJFHASJKFHASJKFHASJKFHSJAKFHAW
>pattern_1
AAGTCTTAAGATATCACCGTCGATTAGGTTTATACAGCTTTTGTGTTATTTAAATTTGAC... (10 Replies)
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3. Shell Programming and Scripting
Input file
>Read_1
XXXXXXXXXXSDFXXXXXDS (condition 1: After the last "X" per line, if the distance is less than or equal to 3 letter, replace those not "X" letter with "X")
TREXXXXXXXSDFXXXXXDS (condition 2: Before the first "X" per line, if the distance is less than or equal to 3 letter,... (12 Replies)
Discussion started by: patrick87
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4. Shell Programming and Scripting
input file:
hsa-miR-4726-5p
Score
hsa-miR-483-5p
Score
hsa-miR-125b-2*
Score
hsa-miR-4492
hsa-miR-4508
hsa-miR-4486
Score
Desired output file:
hsa-miR-4726-5p Score hsa-miR-483-5p Score hsa-miR-125b-2* Score hsa-miR-4492 hsa-miR-4508 hsa-miR-4486 Score ... (6 Replies)
Discussion started by: perl_beginner
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5. Shell Programming and Scripting
Input file:
data21_result1
data23_result1
data43_result1
data43_result2
data43_result3
data3_result1
.
.
data9_result1
Desired output
data1_result1
data2_result1
data3_result1
data3_result2
data3_result3
data4_result1 (3 Replies)
Discussion started by: perl_beginner
3 Replies
6. Shell Programming and Scripting
Format of one input file:
# >length=1
seq program data 909 1992
seq program record 909 1190
Desired output result:
# >length=1
length=1 program data 909 1992
length=1 program record 909 1190
I wanna to replace all the column 1 content (exclude the content start with "#") with the... (5 Replies)
Discussion started by: cpp_beginner
5 Replies
7. Shell Programming and Scripting
Input file:
data21_a0_result1
data23_a1_result1
data43_a0_result1
data43_a1_result2
data43_a0_result3
data3_c0_result1
data3_c1_result1
data423_c0_result1
data423_c1_result1
data423_a0_result1
.
.
data9_c1_result1
Desired output file:
data1_result1
data2_result1 (3 Replies)
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3 Replies
8. Shell Programming and Scripting
Input file:
dependent general_process
dependent general_process
regulation general_process
- -
template component
food component
binding data_rearrangement
binding data_rearrangement
specific_activity data_rearrangement
- ... (7 Replies)
Discussion started by: cpp_beginner
7 Replies
9. Shell Programming and Scripting
Input file
data_2 USA
data_2 JAPAN
data_3 UK
data_4 Brazil
data_5 Singapore
data_5 Indo
data_5 Thailand
data_6 China
Desired output file
data_2 USA/JAPAN
data_3 UK
data_4 Brazil
data_5 Singapore/Indo/Thailand
data_6 China
I would like to merge all data content that share same... (2 Replies)
Discussion started by: perl_beginner
2 Replies
10. Shell Programming and Scripting
Input file:
A_69510335_ASD>aw 1199470 USA
A_119571157_C>awe,QWEQE 113932840 USA
C_34646666_qwe>TAWTT,G,TT 112736796 UK
C_69510335_QW>T 1199470 USA
D_70520237_WR>QEE,G 34459863 UK
D_71380003_QWR>T 145418226 IK
.
Desired output:
A_69510335_ASD>aw 1199470 USA... (1 Reply)
Discussion started by: perl_beginner
1 Replies
SPLIT(1) FSF SPLIT(1)
NAME
split - split a file into pieces
SYNOPSIS
split [OPTION] [INPUT [PREFIX]]
DESCRIPTION
Output fixed-size pieces of INPUT to PREFIXaa, PREFIXab, ...; default PREFIX is `x'. With no INPUT, or when INPUT is -, read standard
input.
Mandatory arguments to long options are mandatory for short options too.
-a, --suffix-length=N
use suffixes of length N (default 2)
-b, --bytes=SIZE
put SIZE bytes per output file
-C, --line-bytes=SIZE
put at most SIZE bytes of lines per output file
-l, --lines=NUMBER
put NUMBER lines per output file
--verbose
print a diagnostic to standard error just before each output file is opened
--help display this help and exit
--version
output version information and exit
SIZE may have a multiplier suffix: b for 512, k for 1K, m for 1 Meg.
AUTHOR
Written by Torbjorn Granlund and Richard M. Stallman.
REPORTING BUGS
Report bugs to <bug-coreutils@gnu.org>.
COPYRIGHT
Copyright (C) 2002 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICU-
LAR PURPOSE.
SEE ALSO
The full documentation for split is maintained as a Texinfo manual. If the info and split programs are properly installed at your site,
the command
info split
should give you access to the complete manual.
split (coreutils) 4.5.3 February 2003 SPLIT(1)