I have line which is read from xml doc. I want to put this line into hash(perl variable). find line below and how i want to put this in hash
<font size="10" type="int" name="ABC" >
hash key should be size, type and name with corresponding value
I doing as below:-
$line =~ s/\s*.*?\s//;... (3 Replies)
I have a script with dynamic hash of hashes , and I want to print the entire hash (with all other hashes).
Itried to do it recursively by checking if the current key is a hash and if yes call the current function again with refference to the sub hash.
Most of the printing seems to be OK but in... (1 Reply)
Hi i am reading one file and creating Hash from the contents of it my issue is there are 3 different files in 3 different locations having same structure so for parsing these files i have one subroutine which returns hash after reading all the 3 files i need to create consolidated hash from three... (2 Replies)
Hi,
Now i work in a code that
1-get data stored in the database in the form of hash table with a key
field which is the " Name"
2-in the same time i open a txt file and loop through it word by word
3- which i have a problem in is that :
I need to loop word by word and check if it is a... (0 Replies)
Hi,
The task i have to do is to
1- create a database contains the Names .run the query and store results in hash make the Name field is the hash key
2- in the same time i have a txt which i will loop through it word by word and check for each word if a hash key ( compare it with the Names in... (0 Replies)
Hello,
I have a hash in hsh. I need to assign it to another hash globalHsh. I think the below statement does not work
$globalHsh{$id} = %hsh;
What is the right way to assign it?
Thanks (3 Replies)
Can Someone explain me why even using Tie::IxHash I can not get the output data in the same order that it was inserted? See code below.
#!/usr/bin/perl
use warnings;
use Tie::IxHash;
use strict;
tie (my %programs, "Tie::IxHash");
while (my $line = <DATA>) {
chomp $line;
my(... (1 Reply)
Hi,
I have an hashes of hash, where hash is dynamic, it can be n number of hash. i need to compare data_count values of all .
my %result (
$abc => {
'data_count' => '10',
'ID' => 'ABC122',
}
$def => {
'data_count' => '20',
'ID' => 'defASe',
... (1 Reply)
Hi, I have a hash of hash where it has
name, activities and count
i have data like this -
$result->{$name}->{$activities} = $value;
content of that are -
name - robert tom cat peter
activities - running, eating, sleeping , drinking, work
i need to print output as below
... (3 Replies)
Discussion started by: asak
3 Replies
LEARN ABOUT DEBIAN
re-pcr
RE-PCR(1) General Commands Manual RE-PCR(1)NAME
re-PCR -- Find sequence tagged sites (STS) in DNA sequences
SYNOPSIS
re-PCR [-hV] -p hash-file [-g gaps] [-n mism] [-lq] [primer ...]
re-PCR [-hV] -P hash-file [-g gaps] [-n mism] [-l] [-m margin] [-O+|-] [-C batchcnt] [-o outfile] [-r+|-] [primers-file ...]
re-PCR [-hV] -s hash-file [-g gaps] [-n mism] [-lq] [-m margin] [-o outfile] [-r+|-] [left right lo[-hi] [...]]
re-PCR [-hV] -S hash-file [-g gaps] [-n mism] [-lq] [-m margin] [-O+|-] [-C batchcnt] [-o outfile] [-r+|-] [stsfile ...]
DESCRIPTION
Implements reverse searching (called Reverse e-PCR) to make it feasible to search the human genome sequence and other large genomes by per-
forming STS and primer searches.
OPTIONS -p=hash-file
Perform primer lookup using hash-file
-P=hash-file
Perform primer lookup using hash-file
-s=hash-file
Perform STS lookup using hash-file
-S=hash-file
Perform STS lookup using hash-file
-n=mism Set max allowed mismatches per primer for lookup
-g=gaps Set max allowed indels per primer for lookup
-m=margin Set variability for STS size for lookup
-l Use presize alignments (only if gaps>0)
-G Print alignments in comments
-d=min-max
Set default STS size
-r=+|- Enable/disable reverse STS lookup
-O=+|- Enable/disable syscall optimisation
-C=batchcnt
Set number of STSes per batch
-o=outfile
Set output file name
-q Quiet (no progress indicator)
EXAMPLE
famap -tN -b genome.famap org/chr_*.fa
fahash -b genome.hash -w 12 -f3 ${PWD}/genome.famap
re-PCR -s genome.hash -n1 -g1 ACTATTGATGATGA AGGTAGATGTTTTT 120-200
See famap(1) and fahash(1)SEE ALSO
/usr/share/doc/ncbi-epcr/README.txt
bioperl(1), e-pcr(1), famap(1) and fahash(1)AUTHORS
This manual page was written by Andreas Tille <tille@debian.org> for the Debian system (but may be used by others). Permission is granted
to copy, distribute and/or modify this document under the terms of the GNU General Public License, Version 2 any later version published by
the Free Software Foundation.
On Debian systems, the complete text of the GNU General Public License can be found in /usr/share/common-licenses/GPL.
April 2008 RE-PCR(1)