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Top Forums Shell Programming and Scripting Transpose columns to Rows : Big data Post 302443904 by alister on Tuesday 10th of August 2010 11:19:13 AM
Old 08-10-2010
Quote:
Originally Posted by kurumi
Ok, so the OP has 2000x 600000 columns. that is over 2GB in file size. do you slurp more than 2GB into memory to do such stuff? What about other processes?
Hi kurumi:

What about other processes? Perhaps there are none besides the basic os services. Perhaps there are thousands. Perhaps there is a dedicated machine for this problem. Perhaps not. Perhaps the hardware available to solve this problem is an old pentium with only a few megabytes of free ram. Perhaps it's a 64-bit monster with many gigabytes of free ram. I do not know. You do not know.

What we do know is that your solution is horribly slow and inefficient even on comparitively small datasets, but it may be the best and only possible approach if there is insufficient ram. My solution is much faster, but horribly ram hungry. This type of trade-off (ram vs i/o-time) is common in algorithmic design. Choice is good and the original poster can choose which best suits his situation, if indeed either of these solutions is suitable.

If I had that 64-bit monster at my disposal, I know which approach I'd choose. Smilie

Regards,
Alister
 

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strsyl.f(3)							      LAPACK							       strsyl.f(3)

NAME
strsyl.f - SYNOPSIS
Functions/Subroutines subroutine strsyl (TRANA, TRANB, ISGN, M, N, A, LDA, B, LDB, C, LDC, SCALE, INFO) STRSYL Function/Subroutine Documentation subroutine strsyl (characterTRANA, characterTRANB, integerISGN, integerM, integerN, real, dimension( lda, * )A, integerLDA, real, dimension( ldb, * )B, integerLDB, real, dimension( ldc, * )C, integerLDC, realSCALE, integerINFO) STRSYL Purpose: STRSYL solves the real Sylvester matrix equation: op(A)*X + X*op(B) = scale*C or op(A)*X - X*op(B) = scale*C, where op(A) = A or A**T, and A and B are both upper quasi- triangular. A is M-by-M and B is N-by-N; the right hand side C and the solution X are M-by-N; and scale is an output scale factor, set <= 1 to avoid overflow in X. A and B must be in Schur canonical form (as returned by SHSEQR), that is, block upper triangular with 1-by-1 and 2-by-2 diagonal blocks; each 2-by-2 diagonal block has its diagonal elements equal and its off-diagonal elements of opposite sign. Parameters: TRANA TRANA is CHARACTER*1 Specifies the option op(A): = 'N': op(A) = A (No transpose) = 'T': op(A) = A**T (Transpose) = 'C': op(A) = A**H (Conjugate transpose = Transpose) TRANB TRANB is CHARACTER*1 Specifies the option op(B): = 'N': op(B) = B (No transpose) = 'T': op(B) = B**T (Transpose) = 'C': op(B) = B**H (Conjugate transpose = Transpose) ISGN ISGN is INTEGER Specifies the sign in the equation: = +1: solve op(A)*X + X*op(B) = scale*C = -1: solve op(A)*X - X*op(B) = scale*C M M is INTEGER The order of the matrix A, and the number of rows in the matrices X and C. M >= 0. N N is INTEGER The order of the matrix B, and the number of columns in the matrices X and C. N >= 0. A A is REAL array, dimension (LDA,M) The upper quasi-triangular matrix A, in Schur canonical form. LDA LDA is INTEGER The leading dimension of the array A. LDA >= max(1,M). B B is REAL array, dimension (LDB,N) The upper quasi-triangular matrix B, in Schur canonical form. LDB LDB is INTEGER The leading dimension of the array B. LDB >= max(1,N). C C is REAL array, dimension (LDC,N) On entry, the M-by-N right hand side matrix C. On exit, C is overwritten by the solution matrix X. LDC LDC is INTEGER The leading dimension of the array C. LDC >= max(1,M) SCALE SCALE is REAL The scale factor, scale, set <= 1 to avoid overflow in X. INFO INFO is INTEGER = 0: successful exit < 0: if INFO = -i, the i-th argument had an illegal value = 1: A and B have common or very close eigenvalues; perturbed values were used to solve the equation (but the matrices A and B are unchanged). Author: Univ. of Tennessee Univ. of California Berkeley Univ. of Colorado Denver NAG Ltd. Date: November 2011 Definition at line 164 of file strsyl.f. Author Generated automatically by Doxygen for LAPACK from the source code. Version 3.4.1 Sun May 26 2013 strsyl.f(3)
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