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Top Forums Shell Programming and Scripting how to run non-standard commands in bash script? Post 302441900 by agama on Tuesday 3rd of August 2010 12:16:44 AM
Old 08-03-2010
Quote:
Originally Posted by EinsteinMcfly
I included the set -x as you said in the following way:
path=$PATH:/opt/local/share/nwchem/nwchem
set -x nwchem $basis_name$func_name$spin_name".nw"
and it output a list of the failed if/then statements (but not the ones that passed), one (but not all) of the directory changes, the exit command etc. It didn't tell me "command not found" as before.
I meant that set -x should be added inside of nwchem near the top (after the #!line if you are using that, otherwise as the first command). Sorry for the confusion.

You probably didn't get an error message this time round because the nwchem command after the 'set -x' was absorbed by the set command and there was no attempt to execute it.

Since you've said that you've been getting a 'not found' message, it does appear that it is a PATH issue, however from what you've posted it looks like you have your PATH setup to include the directory where nwchem exists.
Im not sure what is going on.
 

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FILECAP:(8)						  System Administration Utilities					       FILECAP:(8)

NAME
filecap - a program to see capabilities SYNOPSIS
filecap [ -a | -d | /dir | /dir/file [cap1 cap2 ...] ] DESCRIPTION
filecap is a program that prints out a report of programs with file based capabilities. If a file is not in the report or there is no report at all, no capabilities were found. For expedience, the default is to check only the directories in the PATH environmental variable. If the -a command line option is given, then all directories will be checked. If a directory is passed, it will recursively check that directory. If a path to a file is given, it will only check that file. If the path to the file includes capabilities, then they are written to the file. OPTIONS
-a This tells the program to show all capabilities starting from the / directory. Normally the PATH environmental variable is used to show you capabilities on files you are likely to execute. -d This dumps all capabilities for reference. EXAMPLES
To check file capabilities in $PATH: filecap To check file capabilities of whole system: filecap -a To check file capabilities recursively in a directory: filecap /usr To check file capabilities of a specific program: filecap /bin/passwd To list all possible capabilities: filecap -d To set a file capability on a specific program: filecap /bin/ping net_raw net_admin SEE ALSO
pscap(8), netcap(8), capabilities(7). AUTHOR
Steve Grubb Red Hat March 2009 FILECAP:(8)
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