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Top Forums Shell Programming and Scripting Get common lines from multiple files Post 302437756 by rdcwayx on Friday 16th of July 2010 04:50:20 AM
Old 07-16-2010
Guess there are no duplicate lines in same files.

2 means from 2 files, 3 means from 3 files.
Code:
$ sort File* |uniq -c |sort -n

      1 chr1    110751878    NP_006393.2    HBXIP    P45L
      1 chr1    116944164    NP_001533.2    IGSF3    R671W
      1 chr1    116944223    NP_001007238.1    IGSF3    S631I
      1 chr1    150394079    XP_001724459.1    RPTN    E707G
      1 chr1    150547095    NP_002007.1    FLG    E2297D
      1 chr1    17164810    NP_055490.3    CROCC    G1471R
      1 chr1    172075300    NP_060592.2    DARS2    G338E
      1 chr1    222620225    NP_054903.1    CNIH4    G54S
      1 chr1    246803952    NP_001001821.1    OR2T34    A244T
      1 chr1    31237964    NP_001018494.1    PUM1    M340L
      1 chr1    31237964    NP_055491.1    PUM1    M340L
      1 chr1    33251518    NP_037543.1    AK2    H191D
      1 chr1    40302534    NP_006358.1    CAP1    V115L
      1 chr1    62026171    NP_795352.2    INADL    P336H
      1 ichr1    116944223    NP_001533.2    IGSF3    S651I
      2 chr1    36323375    NP_055281.2    TEKT2    R61G
      2 chr1    57027345    NP_001004303.2    C1orf168    P270S
      2 chr1    89606840    NP_940862.2    GBP6    R48C
      3 chr1    33251518    NP_001616.1    AK2    H191D

 

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DIFF(1) 						      General Commands Manual							   DIFF(1)

NAME
diff - differential file comparator SYNOPSIS
diff [ -efbh ] file1 file2 DESCRIPTION
Diff tells what lines must be changed in two files to bring them into agreement. If file1 (file2) is `-', the standard input is used. If file1 (file2) is a directory, then a file in that directory whose file-name is the same as the file-name of file2 (file1) is used. The normal output contains lines of these forms: n1 a n3,n4 n1,n2 d n3 n1,n2 c n3,n4 These lines resemble ed commands to convert file1 into file2. The numbers after the letters pertain to file2. In fact, by exchanging `a' for `d' and reading backward one may ascertain equally how to convert file2 into file1. As in ed, identical pairs where n1 = n2 or n3 = n4 are abbreviated as a single number. Following each of these lines come all the lines that are affected in the first file flagged by `<', then all the lines that are affected in the second file flagged by `>'. The -b option causes trailing blanks (spaces and tabs) to be ignored and other strings of blanks to compare equal. The -e option produces a script of a, c and d commands for the editor ed, which will recreate file2 from file1. The -f option produces a similar script, not useful with ed, in the opposite order. In connection with -e, the following shell program may help maintain multiple versions of a file. Only an ancestral file ($1) and a chain of version-to-version ed scripts ($2,$3,...) made by diff need be on hand. A `latest version' appears on the standard output. (shift; cat $*; echo '1,$p') | ed - $1 Except in rare circumstances, diff finds a smallest sufficient set of file differences. Option -h does a fast, half-hearted job. It works only when changed stretches are short and well separated, but does work on files of unlimited length. Options -e and -f are unavailable with -h. FILES
/tmp/d????? /usr/lib/diffh for -h SEE ALSO
cmp(1), comm(1), ed(1) DIAGNOSTICS
Exit status is 0 for no differences, 1 for some, 2 for trouble. BUGS
Editing scripts produced under the -e or -f option are naive about creating lines consisting of a single `.'. DIFF(1)
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