Hi,
I am newbee to perl.
I wanna search a file and fetch a pattern starting with
"Total pancakes produced:" and get the numeric value present after the colon.
but, the filename and the phrase(Total pancakes produced:) must be given as input since the input varies everytime.
For example:... (4 Replies)
Hi,
I have file 1.txt with following entries as shown:
0152364|134444|10.20.30.40|015236433
0233654|122555|10.20.30.50|023365433
**
**
**
In file 2.txt I have the following entries as shown:
0152364|134444|10.20.30.40|015236433
0233654|122555|10.20.30.50|023365433... (4 Replies)
Hi all,
I'm looking for some help. I have a file (very long) that is organized like below:
>Cluster 0
0 283nt, >01_FRYJ6ZM12HMXZS... at +/99%
1 279nt, >01_FRYJ6ZM12HN12A... at +/99%
2 281nt, >01_FRYJ6ZM12HM4TS... at +/99%
3 283nt, >01_FRYJ6ZM12HM946... at +/99%
4 279nt,... (4 Replies)
All,
I have the following file:
--------------------------------------
#
# /etc/pam.d/common-password - password-related modules common to all services
#
# This file is included from other service-specific PAM config files,
# and should contain a list of modules that define the services... (2 Replies)
Hi guys
I need to test if the last line of my file is in the following format:
#
(#sign followed by end-of-line character)
Is there a way to do it with awk or sed?
I work in ksh88...
Thanks a lot for help (2 Replies)
Hi,
I am trying to get a result out of this but fails please help. Have two files /tmp/1 & /tmp/hosts.
/tmp/1
IP=123.456.789.01
WAS_HOSTNAME=abcdefgh.was.tb.dsdc
/tmp/hosts
123.456.789.01
I want this result in /tmp/hosts if hostname is already there dont want duplicate entry.
... (5 Replies)
'Hi
I'm using the following code to extract the lines(and redirect them to a txt file) after the pattern match. But the output is inclusive of the line with pattern match.
Which option is to be used to exclude the line containing the pattern?
sed -n '/Conn.*User/,$p' > consumers.txt (11 Replies)
The sample file:
dept1: user1,user2,user3
dept2: user4,user5,user6
dept3: user7,user8,user9
I want to match by '/^dept2.*/' but don't want to have substring 'dept2:' in output. How to compose such regex? (8 Replies)
Hi all!
Thanks for taking the time to view this!
I want to grep out all lines of a file that starts with pattern 1 but also does not match with the second pattern.
Example:
Drink a soda
Eat a banana
Eat multiple bananas
Drink an apple juice
Eat an apple
Eat multiple apples
I... (8 Replies)
Hi
I need to do a patten match between files .
I am new to shell scripting and have come up with this so far. It take 50 seconds to process files of 2mb size . I need to tune this code as file size will be around 50mb and need to save time.
Main issue is that I need to search the pattern from... (2 Replies)
Discussion started by: nitin_daharwal
2 Replies
LEARN ABOUT DEBIAN
bio::seqio::nexml
Bio::SeqIO::nexml(3pm) User Contributed Perl Documentation Bio::SeqIO::nexml(3pm)NAME
Bio::SeqIO::nexml - NeXML sequence input/output stream
SYNOPSIS
Do not use this module directly. Use it via the Bio::SeqIO class.
DESCRIPTION
This object can transform Bio::Seq objects to and from NeXML format. For more information on the NeXML standard, visit
<http://www.nexml.org>.
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to one
of the Bioperl mailing lists. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHORS - Chase Miller
Email: chmille4@gmail.com
CONTRIBUTORS
Mark Jensen, maj@fortinbras.us Rutger Vos, rutgeraldo@gmail.com
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
next_seq
Title : next_seq
Usage : $seq = $stream->next_seq()
Function: returns the next sequence in the stream
Returns : L<Bio::Seq> object
Args : NONE
rewind
Title : rewind
Usage : $seqio->rewind
Function: Resets the stream
Returns : none
Args : none
doc
Title : doc
Usage : $treeio->doc
Function: Returns the biophylo nexml document object
Returns : Bio::Phylo::Project
Args : none or Bio::Phylo::Project object
write_seq
Title : write_seq
Usage : $stream->write_seq(@seq)
Function: Writes the $seq object into the stream
Returns : 1 for success and 0 for error
Args : Array of 1 or more L<Bio::PrimarySeqI> objects
perl v5.14.2 2012-03-02 Bio::SeqIO::nexml(3pm)