06-24-2010
10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
Hi
I have a .conf file having many location tags like
<Location /main>
AuthName main
AuthUserFile /ppt/gaea/passwd_main
Require user admin
</Location>
......
...
<Location /wonder>
AuthName gaea
AuthUserFile /ppt/gaea/passwd_gaea
Require... (3 Replies)
Discussion started by: catgovind
3 Replies
2. Shell Programming and Scripting
My files look like this
And I need to cut the sequences at the last "A" found in the following 'pattern' -highlighted for easier identification, the pattern is the actual file is not highlighted.
The expected result should look like this
Thus, all the sequences would end with AGCCCTA... (2 Replies)
Discussion started by: Xterra
2 Replies
3. Shell Programming and Scripting
If I have a file with the following information
And I would like to remove all the sequences with Freq less than 3, so I end up having the following file:
I am currently using awk to accomplish this task but I am not getting the results I actually want.
Any help will be greatly appreciated. (3 Replies)
Discussion started by: Xterra
3 Replies
4. Shell Programming and Scripting
Hai,
How to remove the repeated 'Chr's in different sequences. In the given example, Chr19 is repeated in two samples
with the same number i.e. +52245923. How to remove one of the entry in any of the samples and to give the range for each
Chr which is -20 for minimum range value and +120 for... (1 Reply)
Discussion started by: hravisankar
1 Replies
5. Shell Programming and Scripting
I have two files containing hundreds of different sequences with the same Identifiers (ID-001, ID-002, etc.,), something like this:
Infile1:
ID-001 ATGGGAGCGGGGGCGTCTGCCTTGAGGGGAGAGAAGCTAGATACA
ID-002 ATGGGAGCGGGGGCGTCTGTTTTGAGGGGAGAGAAGCTAGATACA
ID-003... (18 Replies)
Discussion started by: Xterra
18 Replies
6. Shell Programming and Scripting
I have two files. File1 is shown below.
>153L:B|PDBID|CHAIN|SEQUENCE
RTDCYGNVNRIDTTGASCKTAKPEGLSYCGVSASKKIAERDLQAMDRYKTIIKKVGEKLCVEPAVIAGIISRESHAGKVL
KNGWGDRGNGFGLMQVDKRSHKPQGTWNGEVHITQGTTILINFIKTIQKKFPSWTKDQQLKGGISAYNAGAGNVRSYARM
DIGTTHDDYANDVVARAQYYKQHGY
>16VP:A|PDBID|CHAIN|SEQUENCE... (7 Replies)
Discussion started by: nelsonfrans
7 Replies
7. Windows & DOS: Issues & Discussions
So, I have a text file that looks like this:
0,0: (168,168,176) #A8A8B0 srgb(168,168,176)
1,0: (168,168,176) #A8A8B0 srgb(168,168,176)
2,0: (166,166,174) #A6A6AE srgb(166,166,174)
3,0: (166,166,174) #A6A6AE srgb(166,166,174)
4,0: (168,168,176) #A8A8B0 srgb(168,168,176)
5,0:... (0 Replies)
Discussion started by: pasc
0 Replies
8. Shell Programming and Scripting
Hello guys,
I would need to remove the last character ")" of a specific line. This can be from any line. Your help is appreciated. Below is the line.
HOSTNAME=(DESCRIPTION=(ADDRESS=(PROTOCOL=TCP))
Please help. (6 Replies)
Discussion started by: sang8g
6 Replies
9. Shell Programming and Scripting
Hi. I've tried several different programs to try and solve this problem, but none of them seem to have done exactly what I want (and I need the file in a very specific format). I have a large file of DNA sequences in a multifasta file like this, with around 15 000 genes:
... (2 Replies)
Discussion started by: 4galaxy7
2 Replies
10. UNIX for Beginners Questions & Answers
Hi,
I have to add 7 bases of specific nucleotide at the beginning and ending of all the fasta sequences of a file. For example, I have a multi fasta file namely test.fasta as given below
test.fasta
>TalAA18_Xoo_CIAT_NZ_CP033194.1:_2936369-2939570:+1... (1 Reply)
Discussion started by: dineshkumarsrk
1 Replies
LEARN ABOUT HPUX
secure_sid_scripts
secure_sid_scripts(5) File Formats Manual secure_sid_scripts(5)
NAME
secure_sid_scripts - controls whether setuid and setgid bits on scripts are honored
VALUES
Failsafe
Default
Allowed values
Recommended values
DESCRIPTION
This tunable controls whether and bits on executable scripts have any effect. Honoring on scripts make a system vulnerable to attack by
malicious users.
The default value for this variable is 1, indicating that bits are to be ignored by the execve(2) system call for higher security. The
tunable can be set to 0 for a compatibility with older releases at the expense of security. Hewlett-Packard strongly recommends that you
not change the value of this tunable unless there is an urgent need to do so.
When a script with bits is executed, the kernel generates the following error message to both the terminal controlling and the system log.
(To view the error message, use dmesg(1M) or inspect
Who is Expected to Change This Tunable?
Administrator.
Restrictions on Changing
Changes to this tunable take effect for new scripts started after the change.
When Should the Value of This Tunable Be Changed?
This tunable controls operational modes rather than data structure sizes and limits. The appropriate setting for a system depends on
whether you consider security or compatibility to be most important.
A value of is compatible with previous releases of HP-UX, but it is also less secure.
A value of provides security against race condition attacks exploiting scripts.
What Are the Side Effects of Changing the Value
This tunable controls only executable scripts (not programs) with bit set. HP-UX does not ship with any such scripts. If the customer
wishes to use scripts, third party applications such as or can be used. Alternatively, the shell script can be wrapped in a simple C pro-
gram that runs the shell script with appropriate permissions:
What Other Tunable Values Should Be Changed at the Same Time?
None.
WARNINGS
None. All HP-UX kernel tunable parameters are release specific. This parameter may be removed or have its meaning changed in future
releases of HP-UX.
Installation of optional kernel software, from HP or other vendors, may cause changes to tunable parameter values. After installation,
some tunable parameters may no longer be at the default or recommended values. For information about the effects of installation on tun-
able values, consult the documentation for the kernel software being installed. For information about optional kernel software that was
factory installed on your system, see at
FILES
AUTHOR
was developed by HP.
SEE ALSO
chmod(1), execve(2), kctune(1M).
Tunable Kernel Parameters secure_sid_scripts(5)