Hi
I have a .conf file having many location tags like
<Location /main>
AuthName main
AuthUserFile /ppt/gaea/passwd_main
Require user admin
</Location>
......
...
<Location /wonder>
AuthName gaea
AuthUserFile /ppt/gaea/passwd_gaea
Require... (3 Replies)
My files look like this
And I need to cut the sequences at the last "A" found in the following 'pattern' -highlighted for easier identification, the pattern is the actual file is not highlighted.
The expected result should look like this
Thus, all the sequences would end with AGCCCTA... (2 Replies)
If I have a file with the following information
And I would like to remove all the sequences with Freq less than 3, so I end up having the following file:
I am currently using awk to accomplish this task but I am not getting the results I actually want.
Any help will be greatly appreciated. (3 Replies)
Hai,
How to remove the repeated 'Chr's in different sequences. In the given example, Chr19 is repeated in two samples
with the same number i.e. +52245923. How to remove one of the entry in any of the samples and to give the range for each
Chr which is -20 for minimum range value and +120 for... (1 Reply)
I have two files containing hundreds of different sequences with the same Identifiers (ID-001, ID-002, etc.,), something like this:
Infile1:
ID-001 ATGGGAGCGGGGGCGTCTGCCTTGAGGGGAGAGAAGCTAGATACA
ID-002 ATGGGAGCGGGGGCGTCTGTTTTGAGGGGAGAGAAGCTAGATACA
ID-003... (18 Replies)
I have two files. File1 is shown below.
>153L:B|PDBID|CHAIN|SEQUENCE
RTDCYGNVNRIDTTGASCKTAKPEGLSYCGVSASKKIAERDLQAMDRYKTIIKKVGEKLCVEPAVIAGIISRESHAGKVL
KNGWGDRGNGFGLMQVDKRSHKPQGTWNGEVHITQGTTILINFIKTIQKKFPSWTKDQQLKGGISAYNAGAGNVRSYARM
DIGTTHDDYANDVVARAQYYKQHGY
>16VP:A|PDBID|CHAIN|SEQUENCE... (7 Replies)
So, I have a text file that looks like this:
0,0: (168,168,176) #A8A8B0 srgb(168,168,176)
1,0: (168,168,176) #A8A8B0 srgb(168,168,176)
2,0: (166,166,174) #A6A6AE srgb(166,166,174)
3,0: (166,166,174) #A6A6AE srgb(166,166,174)
4,0: (168,168,176) #A8A8B0 srgb(168,168,176)
5,0:... (0 Replies)
Hello guys,
I would need to remove the last character ")" of a specific line. This can be from any line. Your help is appreciated. Below is the line.
HOSTNAME=(DESCRIPTION=(ADDRESS=(PROTOCOL=TCP))
Please help. (6 Replies)
Hi. I've tried several different programs to try and solve this problem, but none of them seem to have done exactly what I want (and I need the file in a very specific format). I have a large file of DNA sequences in a multifasta file like this, with around 15 000 genes:
... (2 Replies)
Hi,
I have to add 7 bases of specific nucleotide at the beginning and ending of all the fasta sequences of a file. For example, I have a multi fasta file namely test.fasta as given below
test.fasta
>TalAA18_Xoo_CIAT_NZ_CP033194.1:_2936369-2939570:+1... (1 Reply)
Discussion started by: dineshkumarsrk
1 Replies
LEARN ABOUT NETBSD
npm-run-script
NPM-RUN-SCRIPT(1)NPM-RUN-SCRIPT(1)NAME
npm-run-script - Run arbitrary package scripts
SYNOPSIS
npm run-script <command> [--silent] [-- <args>...]
alias: npm run
DESCRIPTION
This runs an arbitrary command from a package's "scripts" object. If no "command" is provided, it will list the available scripts.
run[-script] is used by the test, start, restart, and stop commands, but can be called directly, as well. When the scripts in the package
are printed out, they're separated into lifecycle (test, start, restart) and directly-run scripts.
As of ` https://blog.npmjs.org/post/98131109725/npm-2-0-0, you can use custom arguments when executing scripts. The special option -- is
used by getopt https://goo.gl/KxMmtG to delimit the end of the options. npm will pass all the arguments after the -- directly to your
script:
npm run test -- --grep="pattern"
The arguments will only be passed to the script specified after npm run and not to any pre or post script.
The env script is a special built-in command that can be used to list environment variables that will be available to the script at run-
time. If an "env" command is defined in your package, it will take precedence over the built-in.
In addition to the shell's pre-existing PATH, npm run adds node_modules/.bin to the PATH provided to scripts. Any binaries provided by
locally-installed dependencies can be used without the node_modules/.bin prefix. For example, if there is a devDependency on tap in your
package, you should write:
"scripts": {"test": "tap test/*.js"}
instead of
"scripts": {"test": "node_modules/.bin/tap test/*.js"}
to run your tests.
The actual shell your script is run within is platform dependent. By default, on Unix-like systems it is the /bin/sh command, on Windows it
is the cmd.exe. The actual shell referred to by /bin/sh also depends on the system. As of `
https://github.com/npm/npm/releases/tag/v5.1.0 you can customize the shell with the script-shell configuration.
Scripts are run from the root of the module, regardless of what your current working directory is when you call npm run. If you want your
script to use different behavior based on what subdirectory you're in, you can use the INIT_CWD environment variable, which holds the full
path you were in when you ran npm run.
npm run sets the NODE environment variable to the node executable with which npm is executed. Also, if the --scripts-prepend-node-path is
passed, the directory within which node resides is added to the PATH. If --scripts-prepend-node-path=auto is passed (which has been the
default in npm v3), this is only performed when that node executable is not found in the PATH.
If you try to run a script without having a node_modules directory and it fails, you will be given a warning to run npm install, just in
case you've forgotten.
You can use the --silent flag to prevent showing npm ERR! output on error.
You can use the --if-present flag to avoid exiting with a non-zero exit code when the script is undefined. This lets you run potentially
undefined scripts without breaking the execution chain.
SEE ALSO
o npm help 7 scripts
o npm help test
o npm help start
o npm help restart
o npm help stop
o npm help 7 config
January 2019 NPM-RUN-SCRIPT(1)