I have a pipe delimited file I need to add a sequence number to in the third field. The record fields will be variable length, so I have to parse for the second pipe. Another requirement is that the sequence number must be unique to all records in the file and subsequent files created, so the... (5 Replies)
Can someone please help.
I need to add a sequence number to the start of each line of a file.
It needs to be 6 characters long. ie 000001 next line starts 000002 etc. (4 Replies)
I have a file name -HRCFTSIN05PLA1602100430444444
my requirement is to split the file in 10000 count each file and to add sequence number.rch at the end of each file.
output should be in this format
HRCFTSIN05PLA160210043044444401.rch
HRCFTSIN05PLA160210043044444402.rch... (4 Replies)
I need some help with adding lines to file and substitute a pattern.
Ok I have a file:
#cat names.txt
name: John Doe
stationed: 1
name: Michael Sweets
stationed: 41
.
.
.
And would like to change it to:
name: John Doe
employed
permanently
stationed: 1-office (7 Replies)
Hi All,
I need to create a script which checks for a particular file for eg.kumar1.txt.
If kumar1.txt is already exist the script should increment the file name as kumar2.txt and so on.
Please Advise.
Thanks & Regards,
Kumar66 (2 Replies)
Hi,
I have to append 2 files and while appending i need to add a running sequence number (counter ) for each line at the first column.
For e.g. If file x contains details as below.
Tom
Dick
Harry
Charlie
and file y contains
Boston
Newyork
LA
Toledo
Then the new file should... (1 Reply)
Hi all, I hope someone can help me write a script that:
Reads the xml file which holds Dolphins "Places" in KDE.
If a specific tag is not there, it should create a set for it, in order.
so this little file lives in
~/.kde/share/apps/kfileplaces/bookmark.xml
Here is my example.
<?xml... (3 Replies)
Hi all,
I have a file like this
ID 3BP5L_HUMAN Reviewed; 393 AA.
AC Q7L8J4; Q96FI5; Q9BQH8; Q9C0E3;
DT 05-FEB-2008, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 05-SEP-2012, entry version 71.
FT COILED 59 140 ... (1 Reply)
Hi All ,
I have a file which contains data(comma separated) in below format :
500,Sourav ,kolkata ,8745775020,700091
505,ram,delhi ,9875645874,600032
510 ,madhu ,mumbai ,5698756430 ,500042
515 ,ramesh ,blore ,8769045601 ,400092
I want to add unique sequence number at the start of each... (7 Replies)
I have an array in an external file, "array.txt", which contains:
char *testarray={"Zero", "One", "Two", "Three", "Four", "Five", "Six", "Seven", "Eight", "Nine"};I want to be able to add an element to this array, and have that element display, whenever I call it, without having to recompile... (29 Replies)
Discussion started by: ignatius
29 Replies
LEARN ABOUT DEBIAN
bp_sreformat
BP_SREFORMAT(1p) User Contributed Perl Documentation BP_SREFORMAT(1p)NAME
bpsreformat - convert sequence formats
DESCRIPTION
This script uses the SeqIO system that allows conversion of sequence formats either sequence data or multiple sequence alignment data. The
name comes from the fact that Sean Eddy's program sreformat (part of the HMMER pkg) already does this. Sean's program tries to guess the
input formats while in our code we currently require your to specify what the input and output formats are and if the data is from a
multiple sequence alignment or from straight sequence files.
Usage:
bpsreformat -if INFORMAT -of OUTFORMAT -i FILENAME -o output.FORMAT
-h/--help Print this help
-if/--informat Specify the input format
-of/--outformat Specify the output format
-i/--input Specify the input file name
(to pass in data on STDIN use minus sign as filename)
-o/--output Specify the output file name
(to pass data out on STDOUT use minus sign as filename)
--msa Specify this is multiple sequence alignment data
--special Will pass on special parameters to the AlignIO/SeqIO
object -- most of these are for Bio::AlignIO objects
Comma separated list of the following
nointerleaved -- for phylip,non-interleaved format
idlinebreak -- for phylip, makes it molphy format
percentages -- for clustalw, show % id per line
perl v5.14.2 2012-03-02 BP_SREFORMAT(1p)