hi alister/drl
You have understood correctly why I am not interested need to compare whole line.
I mis typed the input field.
Yes there might be a field which numeric
so I will compare by lpadding at that time.
So I don't want to compare whole line.
Please let me know how to read each line , parse it and compare till end of file.
hi i have two files and i want to compare both the files and find out mismatch in 3rd file
file1
00354|1|0|1|1|0|0|0|1|2
52424|1|0|1|1|0|0|0|1|2
43236|1|0|1|1|0|0|0|1|2
41404|1|0|1|1|0|0|0|1|2
79968|1|0|1|1|0|0|0|1|2
file2
00354|1|0|1|1|0|0|0|1|2
52424|1|0|1|1|0|0|0|0|2... (9 Replies)
i need to compare three files in unix
a.txt b.txt c.txt
1 2 1
2 5 3
4 6 5
5 6
6
i need to insert a blank line in the file if i don't find a match
and put the items at the same column if found a match
The items in the files... (4 Replies)
Using unix shell script, how to compare two files and print lines with mismatch? Below are the requirements:
1. The number of lines on the two files is not the same.
2. The difference/mismatch can be found on the second or third column.
3. The comparison is not between line 1 of file 1 and line... (16 Replies)
I have two files and would like a report of where they match.
Example of file1:
1 1 1
2 2 2
13 14 15
4 4 4
15 16 17
100 102 1004
56 57 890
Example of file2:
2 2 2
16 10 11
45 22 35
13 14 15
1001 1002 3456
100 102 1004 (1 Reply)
hi! i researched about comparing two columns here and got an answer. but after examining my two files, i found out that the first columns of the two files are not unique with each other. all i want to compare is the 2nd and 3rd column.
FILE 1:
ABS 456 315
EBS 923 163
JYQ3 654 237
FILE 2:... (1 Reply)
Hi I am new to shell scripting. There is a requirement to write a shell script to meet follwing needs.Prompt reply shall be highly appreciated.
script that will compare two config files and produce 2 outputs - actual config file and a report indicating changes made.
OS :Susi linux ver 10.3.
... (4 Replies)
Hi
I have used the below steps and found some discrepancies
step 1 :
find ./ -type f -mtime +7 -name "*.00*" | wc -l = 13519 ( total files )
( the size of this files is appx : 10GB )
step 2:
find ./ -type f -mtime +7 -name "*.00*" | xargs tar zcvf Archieve_7.tar.gz
step... (7 Replies)
Hi,
I need to compare 2 text files with around 60000 rows and 1 column. I need to compare these and write the mismatch data to 3rd file.
File1 - file2 = file3
wc -l file1.txt
58112
wc -l file2.txt
55260
head -5 file1.txt
101214200123
101214700300
101250030067
101214100500... (10 Replies)
Hi Everyone,
I am comparing results of two environments using unix files.
I am writing two different csv file using spool and merging both the files using paste command
paste -d, file1.csv file2.csv > prod_uat_result.csv
and then finding the difference and attaching the same in a mail... (8 Replies)
I need to compare two files and find the mismatch columns in it for csv and fixed
width file.
Eg:
file1
c1,c2,c3,c4<----columnname
1,a,4,d
2,b,5,e
3,c,6,f
file2
c1,c2,c3,c4<----columnname
3,x,7,f
2,y,8,e
1,z,9,d
output
c2,c3<---- mismatch columname
a,4 x,7
b,5 or y,8 Ok with... (3 Replies)
Discussion started by: sabzR
3 Replies
LEARN ABOUT DEBIAN
vcf-compare
VCF-COMPARE(1) User Commands VCF-COMPARE(1)NAME
vcf-compare - compare bgzipped and tabix indexed VCF files
SYNOPSIS
compare-vcf [OPTIONS] file1.vcf file2.vcf ...
DESCRIPTION
About: Compare bgzipped and tabix indexed VCF files. (E.g. bgzip file.vcf; tabix -p vcf file.vcf.gz)
OPTIONS -c, --chromosomes <list|file>
Same as -r, left for backward compatibility. Please do not use as it will be dropped in the future.
-d, --debug
Debugging information. Giving the option multiple times increases verbosity
-H, --cmp-haplotypes
Compare haplotypes, not only positions
-m, --name-mapping <list|file>
Use with -H when comparing files with differing column names. The argument to this options is a comma-separated list or one mapping
per line in a file. The names are colon separated and must appear in the same order as the files on the command line.
-R, --refseq <file>
Compare the actual sequence, not just positions. Use with -w to compare indels.
-r, --regions <list|file>
Process the given regions (comma-separated list or one region per line in a file).
-s, --samples <list>
Process only the listed samples. Excluding unwanted samples may increase performance considerably.
-w, --win <int>
In repetitive sequences, the same indel can be called at different positions. Consider records this far apart as matching (be it a
SNP or an indel).
-h, -?, --help
This help message.
vcf-compare 0.1.5 July 2011 VCF-COMPARE(1)