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Shell Programming and Scripting
Compare two files and mismatch report
Post 302424288 by dgmm on Tuesday 25th of May 2010 12:00:20 AM
05-25-2010
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1. Shell Programming and Scripting
hi i have two files and i want to compare both the files and find out mismatch in 3rd file
file1
00354|1|0|1|1|0|0|0|1|2
52424|1|0|1|1|0|0|0|1|2
43236|1|0|1|1|0|0|0|1|2
41404|1|0|1|1|0|0|0|1|2
79968|1|0|1|1|0|0|0|1|2
file2
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i need to compare three files in unix
a.txt b.txt c.txt
1 2 1
2 5 3
4 6 5
5 6
6
i need to insert a blank line in the file if i don't find a match
and put the items at the same column if found a match
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Using unix shell script, how to compare two files and print lines with mismatch? Below are the requirements:
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4. UNIX for Dummies Questions & Answers
I have two files and would like a report of where they match.
Example of file1:
1 1 1
2 2 2
13 14 15
4 4 4
15 16 17
100 102 1004
56 57 890
Example of file2:
2 2 2
16 10 11
45 22 35
13 14 15
1001 1002 3456
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5. Shell Programming and Scripting
hi! i researched about comparing two columns here and got an answer. but after examining my two files, i found out that the first columns of the two files are not unique with each other. all i want to compare is the 2nd and 3rd column.
FILE 1:
ABS 456 315
EBS 923 163
JYQ3 654 237
FILE 2:... (1 Reply)
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Hi
I have used the below steps and found some discrepancies
step 1 :
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Hi,
I need to compare 2 text files with around 60000 rows and 1 column. I need to compare these and write the mismatch data to 3rd file.
File1 - file2 = file3
wc -l file1.txt
58112
wc -l file2.txt
55260
head -5 file1.txt
101214200123
101214700300
101250030067
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Hi Everyone,
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10. AIX
I need to compare two files and find the mismatch columns in it for csv and fixed
width file.
Eg:
file1
c1,c2,c3,c4<----columnname
1,a,4,d
2,b,5,e
3,c,6,f
file2
c1,c2,c3,c4<----columnname
3,x,7,f
2,y,8,e
1,z,9,d
output
c2,c3<---- mismatch columname
a,4 x,7
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LEARN ABOUT DEBIAN
vcf-compare
VCF-COMPARE(1) User Commands VCF-COMPARE(1) NAME
vcf-compare - compare bgzipped and tabix indexed VCF files SYNOPSIS
compare-vcf [OPTIONS] file1.vcf file2.vcf ... DESCRIPTION
About: Compare bgzipped and tabix indexed VCF files. (E.g. bgzip file.vcf; tabix -p vcf file.vcf.gz) OPTIONS
-c, --chromosomes <list|file> Same as -r, left for backward compatibility. Please do not use as it will be dropped in the future. -d, --debug Debugging information. Giving the option multiple times increases verbosity -H, --cmp-haplotypes Compare haplotypes, not only positions -m, --name-mapping <list|file> Use with -H when comparing files with differing column names. The argument to this options is a comma-separated list or one mapping per line in a file. The names are colon separated and must appear in the same order as the files on the command line. -R, --refseq <file> Compare the actual sequence, not just positions. Use with -w to compare indels. -r, --regions <list|file> Process the given regions (comma-separated list or one region per line in a file). -s, --samples <list> Process only the listed samples. Excluding unwanted samples may increase performance considerably. -w, --win <int> In repetitive sequences, the same indel can be called at different positions. Consider records this far apart as matching (be it a SNP or an indel). -h, -?, --help This help message. vcf-compare 0.1.5 July 2011 VCF-COMPARE(1)