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Top Forums Shell Programming and Scripting handling multiple files using awk command and wants to get separate out file for each Post 302420952 by hema dhevi on Thursday 13th of May 2010 03:23:38 AM
Old 05-13-2010
MySQL handling multiple files using awk command and wants to get separate out file for each

hai all
I am new to the world of shell scripting

I wanted to extract two columns from multiple files say around 25 files
and i wanted to get the separate outfile for each input file

tired using the following command to extract two columns from 25 files

Code:
awk '/ATOM/ {print $4,$6}' *.A.pdb >all.txt


files names are like 1_A.pdb, 2_A.pdb, ... 25_A.pdb

but the problem is, its giving everything in a single file i dont want to get it like that
is there any other way to get separate files for each input file



please help me in this regard

thanks lot for ur time
Hema


Moderator's Comments:
Mod Comment Added code tags.

Last edited by radoulov; 05-13-2010 at 06:13 AM..
 

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SHELL-QUOTE(1)						User Contributed Perl Documentation					    SHELL-QUOTE(1)

NAME
shell-quote - quote arguments for safe use, unmodified in a shell command SYNOPSIS
shell-quote [switch]... arg... DESCRIPTION
shell-quote lets you pass arbitrary strings through the shell so that they won't be changed by the shell. This lets you process commands or files with embedded white space or shell globbing characters safely. Here are a few examples. EXAMPLES
ssh preserving args When running a remote command with ssh, ssh doesn't preserve the separate arguments it receives. It just joins them with spaces and passes them to "$SHELL -c". This doesn't work as intended: ssh host touch 'hi there' # fails It creates 2 files, hi and there. Instead, do this: cmd=`shell-quote touch 'hi there'` ssh host "$cmd" This gives you just 1 file, hi there. process find output It's not ordinarily possible to process an arbitrary list of files output by find with a shell script. Anything you put in $IFS to split up the output could legitimately be in a file's name. Here's how you can do it using shell-quote: eval set -- `find -type f -print0 | xargs -0 shell-quote --` debug shell scripts shell-quote is better than echo for debugging shell scripts. debug() { [ -z "$debug" ] || shell-quote "debug:" "$@" } With echo you can't tell the difference between "debug 'foo bar'" and "debug foo bar", but with shell-quote you can. save a command for later shell-quote can be used to build up a shell command to run later. Say you want the user to be able to give you switches for a command you're going to run. If you don't want the switches to be re-evaluated by the shell (which is usually a good idea, else there are things the user can't pass through), you can do something like this: user_switches= while [ $# != 0 ] do case x$1 in x--pass-through) [ $# -gt 1 ] || die "need an argument for $1" user_switches="$user_switches "`shell-quote -- "$2"` shift;; # process other switches esac shift done # later eval "shell-quote some-command $user_switches my args" OPTIONS
--debug Turn debugging on. --help Show the usage message and die. --version Show the version number and exit. AVAILABILITY
The code is licensed under the GNU GPL. Check http://www.argon.org/~roderick/ or CPAN for updated versions. AUTHOR
Roderick Schertler <roderick@argon.org> perl v5.16.3 2010-06-11 SHELL-QUOTE(1)
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