I need to search and count the occurrences of a pattern in a file. The catch here is it's a pattern and not a word ( not necessarily delimited by spaces). For eg. if ABCD is the pattern I need to search and count, it can come in all flavors like (ABCD, ABCD), XYZ.ABCD=100, XYZ.ABCD>=500,... (6 Replies)
I need to count the number of occurrences of a pattern, say 'key', between each occurrence of a different pattern, say 'lu'.
Here's a portion of the text I'm trying to parse:
lu S1234L_149_m1_vg.6, part-att 1, vdp-att 1 p-reserver IID 0xdb
registrations:
key 4156 4353 0000 0000
... (3 Replies)
Greatings all,
I am coming to seek your knowledge and some help on an issue I can not currently get over. I have been searching the boards but did not find anything close to this matter I am struggling with.
I am trying to clean a CSV file and make it loadable for my SQL*Loader. My problem... (1 Reply)
Hi All,
Is it possible to count number of occurrences of a pattern in a single record using awk??
for example:
a line like this:
abrsjdfhafa
I want to count the number of a character occurrences. but still use the default RS, I don't want to set RS to single character. (1 Reply)
Hi there,
i need some help to remove all occurrences of a certain character at the beginning of a string.
Example: my string is 00102030 and i want to remove all zeros from beginning of string so the result is 102030 (3 Replies)
Hi,
I want a script which search for a pattern "good" in a huge file and provide me number of occurences of such pattern in a file.
lets say i have a file test.txt contents as below
good is good
but good is sometime bad and sometime good
you are very good and good is always good
... (7 Replies)
Hi All,
I want to print all the occurrences for a particular pattern from a file. The catch is that the pattern search is partial and if any word in the file contains the pattern, that complete word has to be printed. If there are multiple words matching the pattern on a specific line, then all... (2 Replies)
I have a line that I need to parse through and extract a pattern that occurs multiple times in it.
Example line:
getInfoCall: info received please proceed, getInfoCall: info received please proceed, getInfoCall: info received please proceed, getInfoCall: info received please proceed,... (4 Replies)
Hi folks!
I have a file which contains a 1000 lines. On each line i have multiple occurrences ( 26 to be exact ) of pattern folder#/folder#.
# is depicting the line number in the file
some text here folder1/folder1 some text here folder1/folder1 some text here folder1/folder1 some text... (7 Replies)
The lines that I am trying to format look like
Device ID: j01-01, IP address: 10.10.10.36, IP address: 10.10.10.35, IP address: 10.10.102.201, Platform: 8040, Capabilities: Host ,
Interface: GigabitEthernet9/45, Port ID (outgoing port): e0k,Here is what I have so far but it... (4 Replies)
Discussion started by: dis0wned
4 Replies
LEARN ABOUT DEBIAN
biomaj
biomaj(1) USER COMMANDS biomaj(1)NAME
biomaj - downloads and transform remote biological data banks
SYNOPSIS
biomaj [-h]
DESCRIPTION
BioMAJ (BIOlogie Mise A Jour) is a workflow engine dedicated
to data synchronization and processing.The Software automates
the update cycle and the supervision of the locally mirrored
databank repository. User must have roots rights to run biomaj.
OPTIONS -h display the list of commands.
INSTALL
At installation, BioMAJ requires a database to run (MySQL), installer should first create a database (biomaj_log) and a database user (the
one used at installation setup).
The database configuration for biomaj can be set or modified in /etc/biomaj/db_properties/global.properties.
In the install fails due to a SQL error, the install script must be manually run to create/upgrade the database:
perl /usr/share/biomaj/sql/migration/update.pl
The script will create/upgrade the database and update the configuration files.
ADMIN USER
A default admin user (admin) is created by the scripts. If using the biomaj-watcher, the default password (admin) MUST be changed immedi-
atly via the watcher interface.
If only biomaj core is used, password is useless.
.PP
UPGRADE
In the case of a package upgrade, if properly configured, the migration scripts will be ran automatically at install.
It is possible to run manually the script:
.B See perl /usr/share/biomaj/sql/migration/update.pl -h
for usage.
DATA BANKS
By default, biomaj is configured (data.dir in global.properties) to write banks to /var/lib/biomaj.
EXAMPLES
Update a bank:
biomaj --update genbank
Show console
biomaj --update genbank --console
Show status:
biomaj --status
EXIT STATUS
biomaj returns a zero exist status if it succeeds, it does not represent the bank update status.
AUTHOR
Olivier Sallou (olivier.sallou (at) irisa.fr) Romaric Sabas (romaric.sabas (at) irisa.fr)
version 1.2.0 September 14, 2011 biomaj(1)