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Top Forums Shell Programming and Scripting how to match a numers from file1 to file 2??Ps help me.. Post 302413191 by sureshraj on Thursday 15th of April 2010 12:13:48 AM
Old 04-15-2010
how to match a numers from file1 to file 2??Ps help me..

Hi firends,
I need to write a program in perl for following task,
I have a data like following numbers in file1.txt
Code:
1061338
1159781
1161717
1920355
1924487
2996733
3121872
3124510

I have to search the matching numbers in file2,my file2 is have a multiple columns like this
Code:
rs3934834	  1	   1045729	   A	G	0.1791	0.2054	0.8441	
rs3737728	  1	   1061338	   A	G	0.2845	0.2809	1.018	
rs6687776	  1	   1070488	   A	G	0.1768	0.1956	0.8833
rs9651273	  1	   1071463	   A	G	0.2743	0.2689	1.028	
rs4970405	  1	   1088878	   G	A	0.0922	0.0757	1.24	
rs1272625	  1	   1089873   G	A	0.1369	0.1231	1.13	
rs2298217	  1	   1104902   A	G	0.1448	0.1542	0.9286	
rs4970362	  1	   1134661	   A	G	0.3793	0.3954	0.9346

the underlined column have to matched with file1..But i dont know how to write a program for this task..I need out put like file2 for matching numbers only...Pls any one help me & give me a program in perl..
my output should be like
Code:
rs6596796	6	120522	A	G	0.1058	0.09469	
rs1535053	6	126089	G	A	0.2155	0.2151	
rs12192106	6	137664	A	G	0.06956	0.07949	
rs6913464	6	139090	A	G	0.1702	0.1663	
rs9405480	6	144199	A	G	0.1869	0.1771	
rs9392299	6	148909	G	A	0.07122	0.06203	
rs1418708	6	150610	A	G	0.1386	0.1374
rs1418707	6	150800	G	A	0.192	       0.1631


Last edited by zaxxon; 04-15-2010 at 03:42 AM.. Reason: use code tags please, ty
 

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DIFF(1) 						      General Commands Manual							   DIFF(1)

NAME
diff - differential file comparator SYNOPSIS
diff [ -efbh ] file1 file2 DESCRIPTION
Diff tells what lines must be changed in two files to bring them into agreement. If file1 (file2) is `-', the standard input is used. If file1 (file2) is a directory, then a file in that directory whose file-name is the same as the file-name of file2 (file1) is used. The normal output contains lines of these forms: n1 a n3,n4 n1,n2 d n3 n1,n2 c n3,n4 These lines resemble ed commands to convert file1 into file2. The numbers after the letters pertain to file2. In fact, by exchanging `a' for `d' and reading backward one may ascertain equally how to convert file2 into file1. As in ed, identical pairs where n1 = n2 or n3 = n4 are abbreviated as a single number. Following each of these lines come all the lines that are affected in the first file flagged by `<', then all the lines that are affected in the second file flagged by `>'. The -b option causes trailing blanks (spaces and tabs) to be ignored and other strings of blanks to compare equal. The -e option produces a script of a, c and d commands for the editor ed, which will recreate file2 from file1. The -f option produces a similar script, not useful with ed, in the opposite order. In connection with -e, the following shell program may help maintain multiple versions of a file. Only an ancestral file ($1) and a chain of version-to-version ed scripts ($2,$3,...) made by diff need be on hand. A `latest version' appears on the standard output. (shift; cat $*; echo '1,$p') | ed - $1 Except in rare circumstances, diff finds a smallest sufficient set of file differences. Option -h does a fast, half-hearted job. It works only when changed stretches are short and well separated, but does work on files of unlimited length. Options -e and -f are unavailable with -h. FILES
/tmp/d????? /usr/lib/diffh for -h SEE ALSO
cmp(1), comm(1), ed(1) DIAGNOSTICS
Exit status is 0 for no differences, 1 for some, 2 for trouble. BUGS
Editing scripts produced under the -e or -f option are naive about creating lines consisting of a single `.'. DIFF(1)
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