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Full Discussion: Extract all content that match exactly only specific word
Top Forums Shell Programming and Scripting Extract all content that match exactly only specific word Post 302412242 by patrick87 on Monday 12th of April 2010 05:49:07 AM
Old 04-12-2010
Extract all content that match exactly only specific word
Input:
Code:
21      templeta        parent  35718   36554   .       -       .       ID=parent_cluster_50.21.11; Name=Partial%20parent%20for%20training%20set;
21      templeta        kids    35718   36554   .       -       .       ID=_52; Parent=parent_cluster_5085.21.11;
21      templeta        location        35840   36073   .       -       .       ID=_5285.location4; Parent=_5285
21      templeta        pattern 35840   36073   .       -       0       ID=_52.cds4; Parent=_5285
21      templeta        location        35718   35778   .       -       .       ID=_5285.location5; Parent=_5285
21      templeta        pattern 35758   35778   .       -       0       ID=_52.cds5; Parent=_5285
21      templeta        length  35718   35757   .       -       .       ID=_52.utr3p1; Parent=_5285

21      templeta        parent  43191   43851   .       +       .       ID=parent_cluster_5086.21.12; Name=Partial%20parent%20for%20training%20set;
21      templeta        kids    43191   43851   .       +       .       ID=_5286; Parent=parent_cluster_5086.21.12;
21      templeta        length  43191   43192   .       +       .       ID=_5286.utr5p1; Parent=_5286
21      templeta        location        43191   43851   .       +       .       ID=_5286.location1; Parent=_5286
21      templeta        pattern 43193   43819   .       +       0       ID=_5286.cds1; Parent=_5286; 5_prime_partial=true
21      templeta        length  43820   43851   .       +       .       ID=_5286.utr3p1; Parent=_5286

22      templeta        parent  4204    4962    .       -       .       ID=parent_cluster_5087.22.1; Name=Partial%20parent%20for%20training%20set;
22      templeta        kids    4204    4962    .       -       .       ID=_5287; Parent=parent_cluster_5087.22.1;
22      templeta        length  4876    4962    .       -       .       ID=_5287.utr5p1; Parent=_5287
22      templeta        location        4204    4962    .       -       .       ID=_5287.location1; Parent=_5287
22      templeta        pattern 4204    4875    .       -       0       ID=_5287.cds1; Parent=_5287; 3_prime_partial=true

Desired output:
Code:
21      templeta        parent  35718   36554   .       -       .       ID=parent_cluster_50.21.11; Name=Partial%20parent%20for%20training%20set;
21      templeta        kids    35718   36554   .       -       .       ID=_52; Parent=parent_cluster_5085.21.11;
21      templeta        location        35840   36073   .       -       .       ID=_5285.location4; Parent=_5285
21      templeta        pattern 35840   36073   .       -       0       ID=_52.cds4; Parent=_5285
21      templeta        location        35718   35778   .       -       .       ID=_5285.location5; Parent=_5285
21      templeta        pattern 35758   35778   .       -       0       ID=_52.cds5; Parent=_5285
21      templeta        length  35718   35757   .       -       .       ID=_52.utr3p1; Parent=_5285

Awk code that I have tried:
Code:
awk 'BEGIN {RS=""; FS="\n"}  {for (i=1;i<=NF;i++) {if ($i~/ID=_52/) {print $_}}}' input_file

Output I get:
Code:
21      templeta        parent  35718   36554   .       -       .       ID=parent_cluster_50.21.11; Name=Partial%20parent%20for%20training%20set;
21      templeta        kids    35718   36554   .       -       .       ID=_52; Parent=parent_cluster_5085.21.11;
21      templeta        location        35840   36073   .       -       .       ID=_5285.location4; Parent=_5285
21      templeta        pattern 35840   36073   .       -       0       ID=_52.cds4; Parent=_5285
21      templeta        location        35718   35778   .       -       .       ID=_5285.location5; Parent=_5285
21      templeta        pattern 35758   35778   .       -       0       ID=_52.cds5; Parent=_5285
21      templeta        length  35718   35757   .       -       .       ID=_52.utr3p1; Parent=_5285

21      templeta        parent  43191   43851   .       +       .       ID=parent_cluster_5086.21.12; Name=Partial%20parent%20for%20training%20set;
21      templeta        kids    43191   43851   .       +       .       ID=_5286; Parent=parent_cluster_5086.21.12;
21      templeta        length  43191   43192   .       +       .       ID=_5286.utr5p1; Parent=_5286
21      templeta        location        43191   43851   .       +       .       ID=_5286.location1; Parent=_5286
21      templeta        pattern 43193   43819   .       +       0       ID=_5286.cds1; Parent=_5286; 5_prime_partial=true
21      templeta        length  43820   43851   .       +       .       ID=_5286.utr3p1; Parent=_5286

22      templeta        parent  4204    4962    .       -       .       ID=parent_cluster_5087.22.1; Name=Partial%20parent%20for%20training%20set;
22      templeta        kids    4204    4962    .       -       .       ID=_5287; Parent=parent_cluster_5087.22.1;
22      templeta        length  4876    4962    .       -       .       ID=_5287.utr5p1; Parent=_5287
22      templeta        location        4204    4962    .       -       .       ID=_5287.location1; Parent=_5287
22      templeta        pattern 4204    4875    .       -       0       ID=_5287.cds1; Parent=_5287; 3_prime_partial=true

My purpose is plan to use awk or any other programming language to extract those content that match exactly only "ID=_52" word instead of extract all the content that slightly match to "ID=_52" like "ID_05286", "ID_05287" .
Thanks for any advice.
 

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