I want to select the first column from a daily file called foo.csv. The result is written to file foo.txt. Currently the following script is used for that:
cut -d, -f 1 foo.csv > foo.txt
A typical result would yield :
A12
A45
B11
B67
What needs to happen in addition is that two columns... (5 Replies)
Hi,
I wanted to add specific text to each row in a text file containing three rows. Example:
0 8 7 6 5 5
7 8 9 0 7 9
7 8 9 0 1 2
And I want to add a 21 at the beginning of the first row, and blank spaces at the beginning of the second two rows. To get this:
21 0 8 7 6 5 5
7 8... (4 Replies)
Hi everybody,
I've got two simples file1 like:
aaa aaa aaa
bbb bbb bbb
ccc ccc ccc
and file2 like:
111 111 111
222 222 222
333 333 333
I need to:
1) add a line say "new line" as the first line of the file
2)add a column from file2 (say column3) to file1; the new column should... (14 Replies)
I am attempting to insert multiple lines of text into a specific place in a text file based on the lines above or below it.
For example, Here is a portion of a zone file.
IN NS ns1.domain.tld.
IN NS ns2.domain.tld.
IN ... (2 Replies)
Hi All ,
Kindly help me with this soln
awk '{printf "%s %7s \n", $1,$c}' infile
where
value of variable c I am externally giving input
But executing the above command shows all the columns of infile where as I want only 1st column of infile and 2nd column should print value c (8 Replies)
Hello,
I have a comma separated flat file. It contains some 20 columns. I want to add two new columns at position 2,3. So that file will have 22 columns. I am providing here sample data with file having 4 columns. Appreciate your help in finding solution for this.
data in input file:... (11 Replies)
I have a text file that has three columns. But at the end of the text file, there are trailing lines that have missing second and third columns:
4 0.04972604 KLHL28
4 0.0497332 CSTB
4 0.04979822 AIF1
4 0.04983331 DECR2
4 0.04990344 KATNB1
4
4
4
4
How can I remove the trailing... (3 Replies)
I have a file in which I need to add more columns to based on a key in the first file:
File1
key1,abc,123,
key2,def,456,
key3,ghi,789,
File2
key2,zyx,111,qqq,
key3,yuu,222,www,
key1,pui,333,eee,
key4,xxx,999,rrr,
I would like to create the following output:
Output (1 Reply)
Hello,
I am very now to this, hope you can help,
I am looking into editing a file in Solaris, with dinamic collums (lenght varies) and I need 2 things to be made, the fist is to filter the first column and third column from the file bellow file.txt, and create a new file with the 2 filtered... (8 Replies)
Hello,
Can someone please help in below requirement.
My requirement is to add date before to first column,some text before 1st,2nd coulmns and insert a new column in between 2 and 3 columns.
input file.
aa 123 dddd
aa 667 kdkdk
ddj 738 kkkk
aa 123 dddd
aa 667 ... (5 Replies)
Discussion started by: Cva2568
5 Replies
LEARN ABOUT DEBIAN
fasta_formatter
FASTA_FORMATTER(1) User Commands FASTA_FORMATTER(1)NAME
fasta_formatter - changes the width of sequences line in a FASTA file
DESCRIPTION
usage: fasta_formatter [-h] [-i INFILE] [-o OUTFILE] [-w N] [-t] [-e] Part of FASTX Toolkit 0.0.13.2 by gordon@cshl.edu
[-h] = This helpful help screen.
[-i INFILE]
= FASTA/Q input file. default is STDIN.
[-o OUTFILE] = FASTA/Q output file. default is STDOUT. [-w N] = max. sequence line width for output FASTA file.
When ZERO (the default), sequence lines will NOT be wrapped - all nucleotides of each sequences will appear on a single line (good
for scripting).
[-t] = Output tabulated format (instead of FASTA format).
Sequence-Identifiers will be on first column, Nucleotides will appear on second column (as single line).
[-e] = Output empty sequences (default is to discard them).
Empty sequences are ones who have only a sequence identifier, but not actual nucleotides.
Input Example:
>MY-ID AAAAAGGGGG CCCCCTTTTT AGCTN
Output example with unlimited line width [-w 0]:
>MY-ID AAAAAGGGGGCCCCCTTTTTAGCTN
Output example with max. line width=7 [-w 7]:
>MY-ID AAAAAGG GGGTTTT TCCCCCA GCTN
Output example with tabular output [-t]:
MY-ID AAAAAGGGGGCCCCCTTTTAGCTN
example of empty sequence: (will be discarded unless [-e] is used)
>REGULAR-SEQUENCE-1 AAAGGGTTTCCC >EMPTY-SEQUENCE >REGULAR-SEQUENCE-2 AAGTAGTAGTAGTAGT GTATTTTATAT
SEE ALSO
The quality of this automatically generated manpage might be insufficient. It is suggested to visit
http://hannonlab.cshl.edu/fastx_toolkit/commandline.html
to get a better layout as well as an overview about connected FASTX tools.
fasta_formatter 0.0.13.2 May 2012 FASTA_FORMATTER(1)