Hey all,
I've been trying to find a document. The document is a list of all supported hardware that Solaris 7 supports. If anyone knows where this can be found thx in advanced. I've tried looking through the docs.sun.com site and can't find what I am after.
It's just a list of hardware... (1 Reply)
Can I get some help on this please, I have looked at the many post with similar questions and have tried the solutions and they are not working for my scenario which is:
I have a text file (myfile) that contains
b_log=$g_log/FILENAME.log
echo "Begin processing file FILENAME " >> $b_log
... (4 Replies)
I have 100+ python files in a single directory. I need to replace a specific path occurrence with a variable name.
Following are the find and the replace strings:
Findstring--"projects\\Debugger\\debugger_dp8051_01\\debugger_dp8051_01.cywrk"
Replacestring--self.projpath
I tried... (5 Replies)
Hi,
I'm trying to find all DISTINCT words having _mr in the line and ENCLOSED in '/'.
For eg below is the text in a file..
/database/new_mr254/1
/database/rawdb/views/new_mr254/1
/database/project/rawdb/tables/new_mr232/1
/database/project/rawdb/views/new_mr253/1... (5 Replies)
Hello!
Please, help me to write such script.
I have some text file with name filename.txt
I must check if this file contains string "test-string-first", I must cut from this file string which follows string "keyword-string:" and till first white-space and save it to some variable.
For... (3 Replies)
I have a text file where I need to find the string = ST*850*
This string is repetaed several times in the file, so I need to know how many times it appears in the file, this is the text files:
ISA*00* *00* *08*925485USNR *ZZ*IMSALADDERSP... (13 Replies)
Hi,
I have a File, which have multiple rows.
Like below
123456 Test1 FNAME JRW#$% PB MO Approver XXXXXX. YYYY
123457 Test2 FNAME JRW#$% PB MO Super XXXXXX. YYYY
123458 Test3 FNAME JRW#$% PB MO Approver XXXXXX. YYYY
I want to search a line which contains PB MO Approver and append... (2 Replies)
I have two files
1. input.txt
2. keyword.txt
input.txt has contents like
.src_ref 0 "call.s" 24 first
0x000000 0x5a80 0x0060 BRA.l 0x60
.src_ref 0 "call.s" 30 first
0x000002 0x1bc5 RETI
.src_ref 0 "call.s" 31 first
0x000003 0x6840 ... (2 Replies)
Dear all,
I want to find all the "," in my text file and then replace the commas to a tab. I found a script online but I don't know how to modify the script for my case. Any one can help? Thank you.
@echo off &setlocal
set "search=%1"
set "replace=%2"
set "textfile=Input.txt"
set... (2 Replies)
Discussion started by: forevertl
2 Replies
LEARN ABOUT DEBIAN
re-pcr
RE-PCR(1) General Commands Manual RE-PCR(1)NAME
re-PCR -- Find sequence tagged sites (STS) in DNA sequences
SYNOPSIS
re-PCR [-hV] -p hash-file [-g gaps] [-n mism] [-lq] [primer ...]
re-PCR [-hV] -P hash-file [-g gaps] [-n mism] [-l] [-m margin] [-O+|-] [-C batchcnt] [-o outfile] [-r+|-] [primers-file ...]
re-PCR [-hV] -s hash-file [-g gaps] [-n mism] [-lq] [-m margin] [-o outfile] [-r+|-] [left right lo[-hi] [...]]
re-PCR [-hV] -S hash-file [-g gaps] [-n mism] [-lq] [-m margin] [-O+|-] [-C batchcnt] [-o outfile] [-r+|-] [stsfile ...]
DESCRIPTION
Implements reverse searching (called Reverse e-PCR) to make it feasible to search the human genome sequence and other large genomes by per-
forming STS and primer searches.
OPTIONS -p=hash-file
Perform primer lookup using hash-file
-P=hash-file
Perform primer lookup using hash-file
-s=hash-file
Perform STS lookup using hash-file
-S=hash-file
Perform STS lookup using hash-file
-n=mism Set max allowed mismatches per primer for lookup
-g=gaps Set max allowed indels per primer for lookup
-m=margin Set variability for STS size for lookup
-l Use presize alignments (only if gaps>0)
-G Print alignments in comments
-d=min-max
Set default STS size
-r=+|- Enable/disable reverse STS lookup
-O=+|- Enable/disable syscall optimisation
-C=batchcnt
Set number of STSes per batch
-o=outfile
Set output file name
-q Quiet (no progress indicator)
EXAMPLE
famap -tN -b genome.famap org/chr_*.fa
fahash -b genome.hash -w 12 -f3 ${PWD}/genome.famap
re-PCR -s genome.hash -n1 -g1 ACTATTGATGATGA AGGTAGATGTTTTT 120-200
See famap(1) and fahash(1)SEE ALSO
/usr/share/doc/ncbi-epcr/README.txt
bioperl(1), e-pcr(1), famap(1) and fahash(1)AUTHORS
This manual page was written by Andreas Tille <tille@debian.org> for the Debian system (but may be used by others). Permission is granted
to copy, distribute and/or modify this document under the terms of the GNU General Public License, Version 2 any later version published by
the Free Software Foundation.
On Debian systems, the complete text of the GNU General Public License can be found in /usr/share/common-licenses/GPL.
April 2008 RE-PCR(1)