Sponsored Content
Top Forums Shell Programming and Scripting Remove specific pattern header and its content problem facing Post 302402127 by patrick87 on Tuesday 9th of March 2010 02:42:55 AM
Old 03-09-2010
Remove specific pattern header and its content problem facing

Input file:
Code:
>TRACK:[NAME] Position:  1 TYPE:  1  Pos:   
SVAVPQRHHPGGTVFREPIIIPAIPRLVPGWNKPIIIGRHAFGDQYRATDRVIPGPGKLE
LVYTPVNGEPETVKVYDFQGGGIAQTQYNTDESIRGFAHASFQMALLKGLPLYMSTKNTI
LKRYDGRFKDIFQEIYESTYQKDFEAKNLWYEHRLIDDMVAQMIKSEGGFVMALKNYDGD
>TRACK:[TYPE] Position:  1 TYPE:  2  Pos:  
FAHASFQMALLKGLPLYMS
>TRACK:[TYPE] Position:  2 TYPE:  3  Pos:  
FAHASFQMALLKGLPLYMSFAHASFQMALLKGLPLYMSFAHASFQMALLKGLPLYMS
>TRACK:   1   5 TYPE (s)    963  -   3075   
MSSVRFSSALARRSFAVASPPLSAPLSSSARRFLSSSSSTISSSSSSVSTRSPRSLTSAS
SLLSSRTASARWTGLSSLNLTQSRTMATEIPKIKVKNPVVELDGDEMTRIIWQEIREKGL
EYRDQTDDQVTVEAAEAIKKYGVGVKCATITPDEARVEEFKLKKSTHTEACEWSHTNPCF
SVAVPQRHHPGGTVFREPIIIPAIPRLVPGWNKPIIIGRHAFGDQYRATDRVIPGPGKLE
LVYTPVNGEPETVKVYDFQGGGIAQTQYNTDESIRGFAHASFQMALLKGLPLYMSTKNTI
LKRYDGRFKDIFQEIYESTYQKDFEAKNLWYEHRLIDDMVAQMIKSEGGFVMALKNYDGD
VQSDIVAQGFGSLGLMTSTLVTPTGEAFESEAAHGTVTRHYREHQKGRETSTNPIASIFA
WTRGLIQRGKLDETPDVVTFAEELERACIEVVNDEGIMTKDLALACGRKEREAWVTTREY
MAAVERRLKANLKSRL
.
.
.

Output file:
Code:
>TRACK:[NAME] Position:  1 TYPE:  1  Pos:   
SVAVPQRHHPGGTVFREPIIIPAIPRLVPGWNKPIIIGRHAFGDQYRATDRVIPGPGKLE
LVYTPVNGEPETVKVYDFQGGGIAQTQYNTDESIRGFAHASFQMALLKGLPLYMSTKNTI
LKRYDGRFKDIFQEIYESTYQKDFEAKNLWYEHRLIDDMVAQMIKSEGGFVMALKNYDGD
>TRACK:   1   5 TYPE (s)    963  -   3075   
MSSVRFSSALARRSFAVASPPLSAPLSSSARRFLSSSSSTISSSSSSVSTRSPRSLTSAS
SLLSSRTASARWTGLSSLNLTQSRTMATEIPKIKVKNPVVELDGDEMTRIIWQEIREKGL
EYRDQTDDQVTVEAAEAIKKYGVGVKCATITPDEARVEEFKLKKSTHTEACEWSHTNPCF
SVAVPQRHHPGGTVFREPIIIPAIPRLVPGWNKPIIIGRHAFGDQYRATDRVIPGPGKLE
LVYTPVNGEPETVKVYDFQGGGIAQTQYNTDESIRGFAHASFQMALLKGLPLYMSTKNTI
LKRYDGRFKDIFQEIYESTYQKDFEAKNLWYEHRLIDDMVAQMIKSEGGFVMALKNYDGD
VQSDIVAQGFGSLGLMTSTLVTPTGEAFESEAAHGTVTRHYREHQKGRETSTNPIASIFA
WTRGLIQRGKLDETPDVVTFAEELERACIEVVNDEGIMTKDLALACGRKEREAWVTTREY
MAAVERRLKANLKSRL
.
.
.

Does anybody know how to remove those content that header start with ">TRACK:[TYPE] Position:" pattern and its relative contents? It seems like awk and sed able to archive this goal.
Thanks a lot for any sharing and advice.
 

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

Remove specific content in a file

Hi, I have a file called fl_list consists of files i have to archive. I want to create a exception parm called except_parm, so if it finds the directory it will not archive these files and remove from fl_list. $ cat fl_list /apps/dev/ihub/ready/IA003B/IA003B_Deal_Header_yyyymmdd_hhmmss.txt... (1 Reply)
Discussion started by: k9cheung
1 Replies

2. Shell Programming and Scripting

Renaming all header to specific header pattern

Input #HAC0253 EFVHIJHIJEFVTHIJOPKOPKTEFVEFVEFVOPKHIJOPKOPKHIJTTEFVEFVTEFV #BASFS12 EFVEFVHIJEFVEFVTOPKEFVOPKTHIJTTHIJOPK #ACG5115 TEFVEFVOIJEFVHIJHIJOPKOPKHIJHIJTTEFVEFVOPKTTEFVEFVOPKHIJOPKOPKOPK #ECG5114 IJTOPKHIJEFVOEFVEFVOPKTTEFVEFVOPKHIJOPKOPKOPK . . Output (5 Replies)
Discussion started by: patrick87
5 Replies

3. Shell Programming and Scripting

Extract specific content from data and rename its header problem asking

Input file 1: >pattern_5 GAATTCGTTCATGTAGGTTGASDASFGDSGRTYRYGHDGSDFGSDGGDSGSDGSDFGSDF ATTTAATTATGATTCATACGTCATATGTTATTATTCAATCGTATAAAATTATGTGACCTT SDFSDGSDFKSDAFLKJASLFJASKLFSJAKJFHASJKFHASJKFHASJKFHSJAKFHAW >pattern_1 AAGTCTTAAGATATCACCGTCGATTAGGTTTATACAGCTTTTGTGTTATTTAAATTTGAC... (10 Replies)
Discussion started by: patrick87
10 Replies

4. Shell Programming and Scripting

awk/sed/perl command to delete specific pattern and content above it...

Hi, Below is my input file: Data: 1 Length: 20 Got result. Data: 2 Length: 30 No result. Data: 3 Length: 20 (7 Replies)
Discussion started by: edge_diners
7 Replies

5. Shell Programming and Scripting

Help with rename header content based on reference file problem

I got long list of reference file >data_tmp_number_22 >data_tmp_number_12 >data_tmp_number_20 . . Input file: >sample_data_1 Math, 5, USA, tmp SDFEWRWERWERWRWER FSFDSFSDFSDGSDGSD >sample_data_2 Math, 15, UK, tmp FDSFSDFF >sample_data_3 Math, 50, USA, tmp ARQERREQR . . Desired... (7 Replies)
Discussion started by: perl_beginner
7 Replies

6. Shell Programming and Scripting

Help with replace the content of specific pattern

Input file: __<name>AWEETET</name> ____<name_evidence="3"_type="2@#">QEWQE</name> __<name>QWE048</name> ____<name_evidence="3"_type="570">@#@$#545</name> ____<name_evidence="2"_type="351">QWE4</name> Desired output: __<tmp>AWEETET</tmp> ____<name_evidence="3"_type="2@#">QEWQE</name>... (2 Replies)
Discussion started by: perl_beginner
2 Replies

7. Shell Programming and Scripting

Remove the file content based on the Header of the file

Hi All, I want to remove the content based on the header information . Please find the example below. File1.txt Name|Last|First|Location|DepId|Depname|DepLoc naga|rr|tion|hyd|1|wer|opr Nava|ra|tin|gen|2|wera|opra I have to search for the DepId and remove the data from the... (5 Replies)
Discussion started by: i150371485
5 Replies

8. Red Hat

Moving of file content to another two files after searching with specific pattern

Hello, Please help me with this!! Thanks in advance!! I have a file named file.gc with the content: 1-- Mon Sep 10 08:53:09 CDT 2012 2revoke connect from FR2261; 3delete from mkt_allow where grantee = 'FR2261'; 4grant connect to FR2261 with '******'; 5alter user FR2261 comment... (0 Replies)
Discussion started by: raosr020
0 Replies

9. Shell Programming and Scripting

Facing issues with Content-Type:application/x-download Content-Disposition:attachment

I am in the process of developing a perl cgi page. I had succeeded in developing the page but there are few errors/issues with the page. description about cgi page: My CGI page retrieves all the file names from an directory and displays the files in drop down menu for downloading the... (5 Replies)
Discussion started by: scriptscript
5 Replies

10. Shell Programming and Scripting

How to remove content present in between specific pattern ?

Hi, I have a file with following pattern. We are looking to filter out only specific content from this file. sample BLAdmins Server.* LinuxAdmins Server.* Policy Name: Recommended Default ACL Policy Everyone ACLPushJob.Read Everyone ACLTemplate.Read Everyone ... (9 Replies)
Discussion started by: Litu19
9 Replies
ppmtosixel(1)                                                 General Commands Manual                                                ppmtosixel(1)

NAME
ppmtosixel - convert a portable pixmap into DEC sixel format SYNOPSIS
ppmtosixel [-raw] [-margin] [ppmfile] DESCRIPTION
Reads a portable pixmap as input. Produces sixel commands (SIX) as output. The output is formatted for color printing, e.g. for a DEC LJ250 color inkjet printer. If RGB values from the PPM file do not have maxval=100, the RGB values are rescaled. A printer control header and a color assignment table begin the SIX file. Image data is written in a compressed format by default. A printer control footer ends the image file. OPTIONS
-raw If specified, each pixel will be explicitly described in the image file. If -raw is not specified, output will default to com- pressed format in which identical adjacent pixels are replaced by "repeat pixel" commands. A raw file is often an order of magni- tude larger than a compressed file and prints much slower. -margin If -margin is not specified, the image will be start at the left margin (of the window, paper, or whatever). If -margin is speci- fied, a 1.5 inch left margin will offset the image. PRINTING
Generally, sixel files must reach the printer unfiltered. Use the lpr -x option or cat filename > /dev/tty0?. BUGS
Upon rescaling, truncation of the least significant bits of RGB values may result in poor color conversion. If the original PPM maxval was greater than 100, rescaling also reduces the image depth. While the actual RGB values from the ppm file are more or less retained, the color palette of the LJ250 may not match the colors on your screen. This seems to be a printer limitation. SEE ALSO
ppm(5) AUTHOR
Copyright (C) 1991 by Rick Vinci. 26 April 1991 ppmtosixel(1)
All times are GMT -4. The time now is 06:45 AM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy