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Top Forums UNIX for Dummies Questions & Answers Several file comparison not uniq or comm command Post 302396890 by drl on Friday 19th of February 2010 02:54:03 PM
Old 02-19-2010
Hi.

If I needed to get this done quickly, I would make use of the usual *nix commands. I would add the file name to each line, then manipulate the results so that I had a single file, sort it, collect the lines on which the data items were the same, and then filter for lines which had exactly 2 fields. For example:
Code:
#!/usr/bin/env bash

# @(#) s2	Demonstrate solve problem of unique values with collection.

# Infrastructure details, environment, commands for forum posts. 
set +o nounset
LC_ALL=C ; LANG=C ; export LC_ALL LANG
echo ; echo "Environment: LC_ALL = $LC_ALL, LANG = $LANG"
echo "(Versions displayed with local utility \"version\")"
c=$( ps | grep $$ | awk '{print $NF}' )
version >/dev/null 2>&1 && s=$(_eat $0 $1) || s=""
[ "$c" = "$s" ] && p="$s" || p="$c"
version >/dev/null 2>&1 && version "=o" $p awk
# set -o nounset

rm -f t1 t2
for file in data*
do
  sed "s/$/\t$file/" $file >> t1
done

echo
echo " Sample at beginning & end of $( wc -l < t1) lines in combined data file:"
head -3 t1
echo ...
tail -3 t1

echo
echo " Collector script:"
cat collect

echo
echo " Results for lines with 2 fields:"
sort t1 |
./collect |
tee t2 |
awk ' NF == 2 '

echo
echo " Intermediate file from awk collector script:"
cat t2

exit 0

producing for your data:
Code:
% ./s2

Environment: LC_ALL = C, LANG = C
(Versions displayed with local utility "version")
OS, ker|rel, machine: Linux, 2.6.26-2-amd64, x86_64
Distribution        : Debian GNU/Linux 5.0 
GNU bash 3.2.39
GNU Awk 3.1.5

 Sample at beginning & end of 10 lines in combined data file:
a	data1
b	data1
c	data1
...
a	data3
c	data3
h	data3

 Collector script:
#!/usr/bin/env sh

# @(#) collect	Demonstrate collection script, awk.

FILE="$1"

# Use nawk or /usr/xpg4/bin/awk on Solaris.

awk '
BEGIN	{ FS = OFS = "\t" ; previous = "" ; line = "" ; first = "true"}
first == "true" { first = "false" ; previous = $1 ; line = $0 ; next }
$1 == previous	{ line = line "\t" $2 ; next }
		{ print line ; previous = $1 ; line = $0 }
END	{ print line }
' $FILE

exit 0

 Results for lines with 2 fields:
d	data1
h	data3
t	data2

 Intermediate file from awk collector script:
a	data1	data2	data3
b	data1	data2
c	data1	data3
d	data1
h	data3
t	data2

The awk script is for this specific instance. If this was going to be a on-going task, I would write a more general multi-file join, and have a self-join mode when only one file was specified. In fact, all the operations could probably be placed into the perl code, so that the data need be touched a minimum of times.

Best wishes ... cheers, drl
 

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JOIN(1) 						      General Commands Manual							   JOIN(1)

NAME
join - relational database operator SYNOPSIS
join [ options ] file1 file2 DESCRIPTION
Join forms, on the standard output, a join of the two relations specified by the lines of file1 and file2. If file1 is `-', the standard input is used. File1 and file2 must be sorted in increasing ASCII collating sequence on the fields on which they are to be joined, normally the first in each line. There is one line in the output for each pair of lines in file1 and file2 that have identical join fields. The output line normally con- sists of the common field, then the rest of the line from file1, then the rest of the line from file2. Fields are normally separated by blank, tab or newline. In this case, multiple separators count as one, and leading separators are dis- carded. These options are recognized: -an In addition to the normal output, produce a line for each unpairable line in file n, where n is 1 or 2. -e s Replace empty output fields by string s. -jn m Join on the mth field of file n. If n is missing, use the mth field in each file. -o list Each output line comprises the fields specifed in list, each element of which has the form n.m, where n is a file number and m is a field number. -tc Use character c as a separator (tab character). Every appearance of c in a line is significant. SEE ALSO
sort(1), comm(1), awk(1) BUGS
With default field separation, the collating sequence is that of sort -b; with -t, the sequence is that of a plain sort. The conventions of join, sort, comm, uniq, look and awk(1) are wildly incongruous. JOIN(1)
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