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Shell Programming and Scripting
perl-extract data from hash values
Post 302387636 by daptal on Sunday 17th of January 2010 08:18:04 PM
01-17-2010
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1. Shell Programming and Scripting
I am trying to read in a 2 column data file into Perl Hash array index. Here is my code.
#!/usr/bin/perl -w
use strict;
use warnings;
my $file = "file_a";
my @line = ();
my $index = 0;
my %ind_file = ();
open(FILE, $file) or die($!);
while(<FILE>) {
chomp($_);
if ($_ eq '')
{
... (1 Reply)
Discussion started by: subhap
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2. Shell Programming and Scripting
Can Someone explain me why even using Tie::IxHash I can not get the output data in the same order that it was inserted? See code below.
#!/usr/bin/perl
use warnings;
use Tie::IxHash;
use strict;
tie (my %programs, "Tie::IxHash");
while (my $line = <DATA>) {
chomp $line;
my(... (1 Reply)
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1 Replies
3. Shell Programming and Scripting
Hi,
I have a datahash with 'n' number of values in perl script. I am writing a xml file from the datahash. I am getting output with sorting(Field sorting). My question is that i don't want any default sorting.whatever i am inserting into datahash it should give same xml file.
Any help?
... (0 Replies)
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4. Shell Programming and Scripting
I want to sort values of a hash in ascending order.
my %records;
for my $value (sort values %records){print $value,"\n";}
When I use the above code I get values in this order: 1,10,11,2,3,4,5,6,7,8,9. But, I need values in my output in this order: 1,2,3,4,5,6,7,8,9,10,11.
Can Someone... (1 Reply)
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1 Replies
5. Shell Programming and Scripting
Hi,
I have an hashes of hash, where hash is dynamic, it can be n number of hash. i need to compare data_count values of all .
my %result (
$abc => {
'data_count' => '10',
'ID' => 'ABC122',
}
$def => {
'data_count' => '20',
'ID' => 'defASe',
... (1 Reply)
Discussion started by: asak
1 Replies
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I'm filling in a table of values for grades. I decided to go with reading into a hash from the files but I'm coming up with an error when printing a value that does not exist. I need to know if I can on-the-fly print a space (" ") or blank in place of the grade.
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Hi,
I have a hash with unique keys associated with some data.
my %FINALcontigs = (
'mira_rep_c765:119reads**', 'ctctactggaagactgac',
'mira_rep_c7454:54reads**', 'atggatactgcgctgttgctaactactgga',
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Hi all,
I have written a perl code and stored the data into Data structure using Data::Dumper module.
But not sure how to retreive the data from the Data::Dumper.
Eg.
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9. Shell Programming and Scripting
I know that
@food = %fruit;
Works. But how do I assign %fruit and %veggies to @food ? (2 Replies)
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I am trying to speed up creating a line by line hash file from a huge file using Perl.
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LEARN ABOUT DEBIAN
re-pcr
RE-PCR(1) General Commands Manual RE-PCR(1) NAME
re-PCR -- Find sequence tagged sites (STS) in DNA sequences SYNOPSIS
re-PCR [-hV] -p hash-file [-g gaps] [-n mism] [-lq] [primer ...] re-PCR [-hV] -P hash-file [-g gaps] [-n mism] [-l] [-m margin] [-O+|-] [-C batchcnt] [-o outfile] [-r+|-] [primers-file ...] re-PCR [-hV] -s hash-file [-g gaps] [-n mism] [-lq] [-m margin] [-o outfile] [-r+|-] [left right lo[-hi] [...]] re-PCR [-hV] -S hash-file [-g gaps] [-n mism] [-lq] [-m margin] [-O+|-] [-C batchcnt] [-o outfile] [-r+|-] [stsfile ...] DESCRIPTION
Implements reverse searching (called Reverse e-PCR) to make it feasible to search the human genome sequence and other large genomes by per- forming STS and primer searches. OPTIONS
-p=hash-file Perform primer lookup using hash-file -P=hash-file Perform primer lookup using hash-file -s=hash-file Perform STS lookup using hash-file -S=hash-file Perform STS lookup using hash-file -n=mism Set max allowed mismatches per primer for lookup -g=gaps Set max allowed indels per primer for lookup -m=margin Set variability for STS size for lookup -l Use presize alignments (only if gaps>0) -G Print alignments in comments -d=min-max Set default STS size -r=+|- Enable/disable reverse STS lookup -O=+|- Enable/disable syscall optimisation -C=batchcnt Set number of STSes per batch -o=outfile Set output file name -q Quiet (no progress indicator) EXAMPLE
famap -tN -b genome.famap org/chr_*.fa fahash -b genome.hash -w 12 -f3 ${PWD}/genome.famap re-PCR -s genome.hash -n1 -g1 ACTATTGATGATGA AGGTAGATGTTTTT 120-200 See famap(1) and fahash(1) SEE ALSO
/usr/share/doc/ncbi-epcr/README.txt bioperl(1), e-pcr(1), famap(1) and fahash(1) AUTHORS
This manual page was written by Andreas Tille <tille@debian.org> for the Debian system (but may be used by others). Permission is granted to copy, distribute and/or modify this document under the terms of the GNU General Public License, Version 2 any later version published by the Free Software Foundation. On Debian systems, the complete text of the GNU General Public License can be found in /usr/share/common-licenses/GPL. April 2008 RE-PCR(1)