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Top Forums Shell Programming and Scripting Uppercase/lowercase comparison of one character per line with awk?? Post 302385058 by durden_tyler on Thursday 7th of January 2010 03:00:06 AM
Old 01-07-2010
Quote:
Originally Posted by ivpz
.. There is only one A, i.e. 1 in column 2 and 0 in column 5.
Why column 5 ? If A, C, G, T are in columns 2, 3, 4, 5, then shouldn't "a" be in column 6 ?

Here's the line no. 8 (from the top) of your original post:

Code:
....,,..,,...,,......,...cA.c,cC. 1 1 0 0 0 3 0 0

Now, aren't the fields supposed to mean the following ?

Code:
Column 1                            Column 2   Column 3   Column 4   Column 5   Column 6   Column 7   Column 8   Column 9
The data                            "A" count  "C" count  "G" count  "T" count  "a" count  "c" count  "g" count  "t" count
=================================   =========  =========  =========  =========  =========  =========  =========  =========
.....,,..,,...,,......,...cA.c,cC.  1          1          0          0          0          3          0          0

So, count of all uppercase characters (A, C, G, T) in columns 2, 3, 4, 5 respectively = 1 + 1 + 0 + 0 = 2

Count of all lowercase characters (a, c, g, t) in columns 6, 7, 8, 9 respectively = 0 + 3 + 0 + 0 = 3

Hence, shouldn't line 8 be followed by "-" because count of uppercase characters < count of lowercase characters ?

tyler_durden
 

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Alzabo::Create::Index(3pm)				User Contributed Perl Documentation				Alzabo::Create::Index(3pm)

NAME
Alzabo::Create::Index - Index objects for schema creation SYNOPSIS
use Alzabo::Create::Index; DESCRIPTION
This object represents an index on a table. Indexes consist of columns and optional prefixes for each column. The prefix specifies how many characters of the columns should be indexes (the first X chars). Some RDBMS's do not have a concept of index prefixes. Not all col- umn types are likely to allow prefixes though this depends on the RDBMS. The order of the columns is significant. INHERITS FROM
"Alzabo::Index" Note: all relevant documentation from the superclass has been merged into this document. METHODS
new The constructor takes the following parameters: * table => "Alzabo::Create::Table" object The table that this index is indexing. * columns => [ "Alzabo::Create::Column" object, .. ] * columns => [ { column => "Alzabo::Create::Column" object, prefix => $prefix }, repeat as needed ... ] This parameter indicates which columns that are being indexed. It can either be an array reference of column objects, or an array ref- erence of hash references, each with a key called column and one called prefix. The prefix key is optional. * unique => $boolean Indicates whether or not this is a unique index. * fulltext => $boolean Indicates whether or not this is a fulltext index. * function => $string This can be used to create a function index where supported. The value of this parameter should be the full function, with column names, such as "LCASE( username )". The "columns" parameter should include all the columns used in the function. Returns a new "Alzabo::Create::Index" object. Throws: "Alzabo::Exception::Params", "Alzabo::Exception::RDBMSRules" table Returns the "Alzabo::Create::Table" object to which the index belongs. columns Returns an ordered list of the "Alzabo::Create::Column" objects that are being indexed. add_column Adds a column to the index. This method takes the following parameters: * column => "Alzabo::Create::Column" object * prefix => $prefix (optional) Throws: "Alzabo::Exception::Params", "Alzabo::Exception::RDBMSRules" delete_column ("Alzabo::Create::Column" object) Deletes the given column from the index. Throws: "Alzabo::Exception::Params", "Alzabo::Exception::RDBMSRules" prefix ("Alzabo::Create::Column" object) A column prefix is, to the best of my knowledge, a MySQL specific concept, and as such cannot be set when using an RDBMSRules module for a different RDBMS. However, it is important enough for MySQL to have the functionality be present. It allows you to specify that the index should only look at a certain portion of a field (the first N characters). This prefix is required to index any sort of BLOB column in MySQL. This method returns the prefix for the column in the index. If there is no prefix for this column in the index, then it returns undef. set_prefix This method takes the following parameters: * column => "Alzabo::Create::Column" object * prefix => $prefix Throws: "Alzabo::Exception::Params", "Alzabo::Exception::RDBMSRules" unique Returns a boolean value indicating whether the index is a unique index. set_unique ($boolean) Sets whether or not the index is a unique index. fulltext Returns a boolean value indicating whether the index is a fulltext index. set_fulltext ($boolean) Set whether or not the index is a fulltext index. Throws: "Alzabo::Exception::Params", "Alzabo::Exception::RDBMSRules" register_column_name_change This method takes the following parameters: * column => "Alzabo::Create::Column" object The column (with the new name already set). * old_name => $old_name This method is called by the table object which owns the index when a column name changes. You should never need to call this yourself. Throws: "Alzabo::Exception::Params" id The id is generated from the table, column and prefix information for the index. This is useful as a canonical name for a hash key, for example. Returns a string that is the id which uniquely identifies the index in this schema. AUTHOR
Dave Rolsky, <autarch@urth.org> perl v5.8.8 2007-12-23 Alzabo::Create::Index(3pm)
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