Login or Register to Ask a Question and Join Our Community

Sponsored Content
Full Discussion: Match first pattern first then extract second pattern match
Top Forums Shell Programming and Scripting Match first pattern first then extract second pattern match Post 302377981 by rdcwayx on Sunday 6th of December 2009 07:12:47 AM
Old 12-06-2009
Debian
patrick87, your sample input file make us confused. So I have to guess.

I change your input file, in number two session, there is no keyword accession. Please confirm, if this is your desired output.

Code:
$ cat input.txt
<accession>Q91G55</accession>
<name>043L_IIV6</name>
<protein>
<recommendedName>
<location>
<position position="294"/>
</location>
<fullName>Uncharacterized protein 043L</fullName>

<name>1106L_ASFB7</name>
<protein>
<recommendedName>
<fullName>Protein MGF 110-6L</fullName>

<accession>O55734</accession>
<name>120L_IIV6</name>
<fullName>Uncharacterized protein 120L</fullName>

$  awk 'BEGIN {RS=""; FS="\n"} /<accession>/ {for (i=1;i<=NF;i++) {if ($i~/<fullName>/) {print $i}}}' input.txt
<fullName>Uncharacterized protein 043L</fullName>
<fullName>Uncharacterized protein 120L</fullName>

 

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

Extract data from records that match pattern

Hi Guys, I have a file as follows: a b c 1 2 3 4 pp gg gh hh 1 2 fm 3 4 g h i j k l m 1 2 3 4 d e f g h j i k l 1 2 3 f 3 4 r t y u i o p d p re 1 2 3 f 4 t y w e q w r a s p a 1 2 3 4 I am trying to extract all the 2's from each row. 2 is just an example... (6 Replies)
Discussion started by: npatwardhan
6 Replies

2. Shell Programming and Scripting

Need one liner to search pattern and print everything expect 6 lines from where pattern match made

i need to search for a pattern from a big file and print everything expect the next 6 lines from where the pattern match was made. (8 Replies)
Discussion started by: chidori
8 Replies

3. Shell Programming and Scripting

Awk to match a pattern and perform a search after the first pattern

Hello Guyz I have been following this forum for a while and the solutions provided are super useful. I currently have a scenario where i need to search for a pattern and start searching by keeping the first pattern as a baseline ABC DEF LMN EFG HIJ LMN OPQ In the above text i need to... (8 Replies)
Discussion started by: RickCharles
8 Replies

4. Shell Programming and Scripting

Pattern Match & Extract from a string

Hi, I have long string in 2nd field, as shown below: REF1 | CLESCLJSCSHSCSMSCSNSCSRSCUDSCUFSCU7SCV1SCWPSCXGPDBACAPA0DHDPDMESED6 REF2 | SBR4PCBFPCDRSCSCG3SCHEBSCKNSCKPSCLLSCMCZXTNPCVFPCV6P4KL0DMDSDSASEWG I have a group of fixed patterns which can occur in these long strings & only... (11 Replies)
Discussion started by: karumudi7
11 Replies

5. UNIX for Dummies Questions & Answers

Match Pattern after certain pattern and Print words next to Pattern

Hi experts , im new to Unix,AWK ,and im just not able to get this right. I need to match for some patterns if it matches I need to print the next few words to it.. I have only three such conditions to match… But I need to print only those words that comes after satisfying the first condition..... (2 Replies)
Discussion started by: 100bees
2 Replies

6. Shell Programming and Scripting

Pattern match exclusive return pattern/variable

I have an application(Minecraft Server) that generates a logfile live. Using Crontab and screen I send a 'list' command every minute. Sample Log view: 2013-06-07 19:14:37 <Willrocksyea1> hello* 2013-06-07 19:14:41 <Gromden29> hey 2013-06-07 19:14:42 Gromden29 lost connection:... (1 Reply)
Discussion started by: gatekeeper258
1 Replies

7. Shell Programming and Scripting

Extract lines that match a pattern

Hi all, I got a file that contains the following content, Actually it is a part of the file content, Installing XYZ XYZA Image, API 18, revision 2 Unzipping XYZ XYZA Image, API 18, revision 2 (1%) Unzipping XYZ XYZA Image, API 18, revision 2 (96%) Unzipping XYZ XYZA Image, API 18,... (7 Replies)
Discussion started by: Kashyap
7 Replies

8. Shell Programming and Scripting

Rearrange or replace only the second line after pattern match or pattern match

Im using the command below , but thats not the output that i want. it only prints the odd and even numbers. awk '{if(NR%2){print $0 > "1"}else{print $0 > "2"}}' Im hoping for something like this file1: Text hi this is just a test text1 text2 text3 text4 text5 text6 Text hi... (2 Replies)
Discussion started by: invinzin21
2 Replies

9. Shell Programming and Scripting

Match Pattern and print pattern and multiple lines into one line

Hello Experts , require help . See below output: File inputs ------------------------------------------ Server Host = mike id rl images allocated last updated density vimages expiration last read <------- STATUS ------->... (4 Replies)
Discussion started by: tigerhills
4 Replies

10. UNIX for Beginners Questions & Answers

Help with pattern match and Extract

Hi All, I am having a file like below . Basically when SB comes in the text with B. I have to take the word till SB. When there only B I should take take till B. Tried for cut it by demilter but not able to build the logic SB- CD B_RESTO SB_RESTO CRYSTALS BOILERS -->There SB and B so I... (6 Replies)
Discussion started by: arunkumar_mca
6 Replies

LEARN ABOUT DEBIAN

matcheditor

MatchEditor(3I) 					    InterViews Reference Manual 					   MatchEditor(3I)

NAME

       MatchEditor - StringEditor with pattern matching

SYNOPSIS

       #include <InterViews/matcheditor.h>

DESCRIPTION

       MatchEditor  is	a StringEditor subclass that checks the validity of its contents against a specified pattern.  It is suitable for entering
       strings that must conform to a particular format such as a number or a file name.  The matching pattern is specified according to the rules
       of  scanf(3).   For  example, a pattern of "%3d" will match a 3-digit integer, a pattern of "%[ab]" will match a string containing only a's
       and b's, and a pattern of "(%f, %f)" will match the string "(12.0, 5E23)".

PUBLIC OPERATIONS

       MatchEditor(ButtonState*, const char* sample, const char* done)
	      Create a new MatchEditor object.	The ButtonState, sample string, and termination string are passed to the StringEditor constructor.

       void Match(const char* pattern, boolean keystroke = true)
	      Specify the pattern to match against.  When MatchEditor performs matching, it will highlight any trailing part of  the  edit  string
	      that  does  not  conform to pattern.  The user can then correct the string.  If keystroke is true, matching will occur on every key-
	      stroke; otherwise matching will only occur on the completion of the edit.  The initial pattern matches any string, and  the  initial
	      value of keystroke is true.

RESTRICTIONS

       MatchEditor  uses  sscanf  internally to check the pattern match.  Different versions of sscanf have different scanning capabilities; check
       with your local version to see what patterns you can use.

SEE ALSO

       StringEditor(3I)

InterViews							    7 Dec 1989							   MatchEditor(3I)
All times are GMT -4. The time now is 04:44 PM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy