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Top Forums Shell Programming and Scripting Match first pattern first then extract second pattern match Post 302377911 by patrick87 on Saturday 5th of December 2009 07:42:52 PM
Old 12-05-2009
Quote:
Originally Posted by zaxxon
I don't understand what you need. From the description I'd say that your expected output is not correct.

Maybe you are looking for something like this:
Code:
awk '/^<accession/ {print} /^<fullName/ {print}' infile
<accession>Q91G55</accession>
<fullName>Uncharacterized protein 043L</fullName>
<accession>P18556</accession>
<fullName>Protein MGF 110-6L</fullName>
<accession>O55734</accession>
<fullName>Uncharacterized protein 120L</fullName>

If you only want the output you have shown in your example, use a simple grep to get he lines that contain "fullName".

Exact output example of what you need would help. The descriptions are confusing, sorry.
Hi zaxxon,
sorry that my question let you all confusing Smilie
Actually I won't select all the <accession> from a long list of list. I only want to extract specific <accession> from a long list of data. From those selected <accession> detail, I want extract all of its <fullName>. Hope that you can understand my problem now Smilie
sorry if my problem give you all confusing Smilie

---------- Post updated at 07:42 PM ---------- Previous update was at 07:41 PM ----------

Hi Franklin52,
sorry that my question let you all confusing
Actually at first I won't extract all the <accession> from a long list of list. I only want to extract specific <accession> from a long list of data. From those selected <accession> detail, I want extract all of its <fullName>. Hope that you can understand my problem now Smilie
sorry if my problem give you all confusing Smilie
 

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English(3pm)						 Perl Programmers Reference Guide					      English(3pm)

NAME
English - use nice English (or awk) names for ugly punctuation variables SYNOPSIS
use English; use English qw( -no_match_vars ) ; # Avoids regex performance penalty # in perl 5.16 and earlier ... if ($ERRNO =~ /denied/) { ... } DESCRIPTION
This module provides aliases for the built-in variables whose names no one seems to like to read. Variables with side-effects which get triggered just by accessing them (like $0) will still be affected. For those variables that have an awk version, both long and short English alternatives are provided. For example, the $/ variable can be referred to either $RS or $INPUT_RECORD_SEPARATOR if you are using the English module. See perlvar for a complete list of these. PERFORMANCE
NOTE: This was fixed in perl 5.20. Mentioning these three variables no longer makes a speed difference. This section still applies if your code is to run on perl 5.18 or earlier. This module can provoke sizeable inefficiencies for regular expressions, due to unfortunate implementation details. If performance matters in your application and you don't need $PREMATCH, $MATCH, or $POSTMATCH, try doing use English qw( -no_match_vars ) ; . It is especially important to do this in modules to avoid penalizing all applications which use them. perl v5.18.2 2014-01-06 English(3pm)
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