Hi,
I have sentences like this:
$sent=
Protein modeling studies reveal that the RG-rich region is part of a three to four strand antiparallel beta-sheet, which in other RNA binding protein functions as a platform for nucleic acid interactions.
Heterogeneous nuclear ribonucleoparticle... (19 Replies)
Hi all,
Is anyone able to help with the following query?
I have an input file with several lines of words, e.g.
"hellolaylahello"
"hellohellohellolayla"
I want to search for the exact string "hello" in each line and display:
2 "hellolaylahello"
3 "hellohellohellolayla"
I... (11 Replies)
I'm trying to find a exact word match but couldn't do it.
ABC
ABC_NE
Searching for ABC_NE tried
grep -w </ABC_NE/>
grep "^ABC_NE$"
but didn't worked , any awk variants would also help.
---------- Post updated at 08:40 AM ---------- Previous update was at 06:48 AM ----------
I... (2 Replies)
I am trying to match a pattern exactly in a shell script. I have tried two methods
awk '/\<mpath${CURR_MP}\>/{print $1 $2}' multipath
perl -ne '/\bmpath${CURR_MP}\b/ and print' /var/tmp/multipath
Both these methods require that I use the escape character. I am guessing that is why... (8 Replies)
I have a file that has the words I want to find in other files (but lets say I just want to find my words in a single file). Those words are IDs, so if my word is ZZZ4, outputs like aaZZZ4, ZZZ4bb, aaZZZ4bb, ZZ4, ZZZ, ZyZ4, ZZZ4.8 (or anything like that) WON'T BE USEFUL.
I need the whole word... (6 Replies)
Hi friends,
i am using the following grep command for exact word match:
>echo "sachin#tendulkar" | grep -iw "sachin"
output: sachin#tendulkar
as we can see in the above example that its throwinng the exact match(which is not the case as the keyword is sachin and string is... (6 Replies)
I want to match exact string stored in Variable INO and print next two lines. I have written below code which partially matches:
awk '/\'$VAR'/{getline; getline; print}'
Will be thankful , if somebody can help in to resolve this problem.
Please view this code tag video for how to use... (9 Replies)
Hello,
I am writing a script in awk where I need to match a whole word that is stored inside a variable.
For example:
I am working on a text that looks like this, and I want to print the second row:
sfasfsomethingsfasf
this is something I can use
this is not somethingIcanuse
... (12 Replies)
Hi All,
My Input file contains a 1000’s of lines in which I have to replace a
a string to the other. Here the problem is, I have the lines in my Input as below.
Cable Yes && !Pay TV && !ADS
\noUE \Label="Cable Yes && !Pay TV && !ADS"
I want to replace exactly the string Cable Yes &&... (37 Replies)
I am trying to create a cronjob that will run on startup that will look at a list.txt file to see if there is a later version of a database using database.txt as the source. The matching lines are written to output.
$1 in database.txt will be in list.txt as a partial match. $2 of database.txt... (2 Replies)
Discussion started by: cmccabe
2 Replies
LEARN ABOUT DEBIAN
trna2sap
TRNA2SAP(1) NCBI Tools User's Manual TRNA2SAP(1)NAME
trna2sap - convert tRNAscan-SE output to an ASN.1 Seq-annot object
SYNOPSIS
trna2sap [-] [-a] [-c str] [-f str] [-i filename] [-j] [-m str] [-n str] [-o filename] [-p dir] [-r dir] [-s] [-t str] [-u] [-x str]
DESCRIPTION
trna2sap reads a text file produced by tRNAscan-SE and produces a corresponding ASN.1 Seq-annot in the format understood by other NCBI
tools.
OPTIONS
A summary of options is included below.
- Print usage message
-a Add tRNAscan-SE citation
-c str Comment
-f str Substring Filter
-i filename
Single Input file (standard input by default)
-j Just produce a five-column feature table, a la trna2tbl(1).
-m str ReMark
-n str Annotation Name (normally "tRNA").
-o filename
Single Output file (standard output by default)
-p dir Path to files
-r dir Path for Results
-s Ignore Pseudo tRNAs
-t str Annotation Title (normally "tRNAscan-SE").
-u Ignore Undetermined tRNAs
-x str File selection suffix with -p (.trna by default).
AUTHOR
The National Center for Biotechnology Information.
SEE ALSO sequin(1), tbl2asn(1), trna2tbl(1).
NCBI 2006-01-11 TRNA2SAP(1)