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Full Discussion: Awk Assistance
Top Forums Shell Programming and Scripting Awk Assistance Post 302371391 by jsmithstl on Saturday 14th of November 2009 02:03:14 PM
Old 11-14-2009
I used perl to come up with this... hope it helps.

Code:
#!/usr/bin/perl

use strict;

my $seq_len;
my @a_seq;
my $seq;
my $hdr;

open SEQ_FILE, "<seq.dat"
  or die "can't open file: $!";

while(<SEQ_FILE>)
{
   chomp($_);

   if ( $_ =~ m/description/ )
   {
      print "$_\n";
   }
   else
   {
      @a_seq = split('J', $_);

      foreach $seq (@a_seq)
      {
         $seq_len = length($seq);
         print "$seq $seq_len\n";
      }
   }
}

close SEQ_FILE
  or die "can't close file: $!";

exit


Code:
>description 1-blah blah blah
ASDFGH 6
KLMNPTRWQCVNM 13
KLOTYUQBEBDB 12
DB 2
DB 2
DB 2
D 1
 0
K 1
H 1
H 1
HDTYREWQDAXZCDBNDMMSKSKHGFSHSCVAIOPQTRE 39
>description 2-blah blah blah
SDFGHTYUIOPQNMZH 16
KGCDVBDKD 9
LD 2
L 1
DLD 3
L 1
L 1
L 1
D 1
D 1
 0
LD 2
YTRQWUATSHNZMKSLDOEBDLDOSLSPWGSSHABAHAHAKLKAA 45
HSTDFDDVDGDGD 13

 

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Acme::Brainfuck(3)					User Contributed Perl Documentation					Acme::Brainfuck(3)

NAME
Acme::Brainfuck - Embed Brainfuck in your perl code SYNOPSIS
#!/usr/bin/env perl use Acme::Brainfuck; print 'Hello world!', chr ++++++++++. ; DESCRIPTION
Brainfuck is about the tiniest Turing-complete programming language you can get. A language is Turing-complete if it can model the opera- tions of a Turing machine--an abstract model of a computer defined by the British mathematician Alan Turing in 1936. A Turing machine con- sists only of an endless sequence of memory cells and a pointer to one particular memory cell. Yet it is theoretically capable of perform- ing any computation. With this module, you can embed Brainfuck instructions delimited by whitespace into your perl code. It will be trans- lated into Perl as parsed. Brainfuck has just just 8 instructions (well more in this implementation, see "Extensions to ANSI Brainfuck" below.) which are as follows Instructions + Increment Increase the value of the current memory cell by one. - Decrement Decrease the value of the current memory cell by one. > Forward Move the pointer to the next memory cell. < Back Move the pointer to the previous memory cell. , Input Read a byte from Standard Input and store it in the current memory cell. . Output Write the value of the current memory cell to standard output. [ Loop If the value of the current memory cell is 0, continue to the cell after the next ']'. ] Next Go back to the last previous '['. Extensions to ANSI Brainfuck This implementation has extra instructions available. In order to avoid such terrible bloat, they are only available if you use the ver- bose pragma like so: use Acme::Brainfuck qw/verbose/; The extra instructions are: ~ Reset Resets the pointer to the first memory cell and clear all memory cells. # Peek Prints the values of the memory pointer and the current memory cell to STDERR. See also "Debugging" below. Debugging By using the debug pragma like this: use Acme::Brainfuck qw/debug/; you can dump out the generated perl code. (Caution: it is not pretty.) The key to understanding it is that the memory pointer is repre- sented by $p, and the memory array by @m Therefore the value of the current memory cell is $m[$p]. RETURN VALUE
Each sequence of Brainfuck instructions becomes a Perl block and returns the value of the current memory cell. EXAMPLES
JABH #!/usr/bin/env perl use Acme::Brainfuck; print "Just another "; ++++++[>++++++++++++++++<-]> ++.-- >+++[<++++++>-]<.>[-]+++[<------>-]< +.- +++++++++.--------- ++++++++++++++.-------------- ++++++.------ >+++[<+++++++>-]<.>[-]+++[<------->-]< +++.--- +++++++++++.----------- print " hacker. "; Countdown #!/usr/bin/env perl use strict; use Acme::Brainfuck qw/verbose/; print "Countdown commencing... "; ++++++++++[>+>+<<-] >>+++++++++++++++++++++++++++++++++++++++++++++++<< ++++++++++[>>.-<.<-] print "We have liftoff! "; Reverse #!/usr/bin/env perl use Acme::Brainfuck qw/verbose/; while(1) { print "Say something to Backwards Man and then press enter: "; +[->,----------]< print 'Backwards Man says, "'; [+++++++++++.<]< print "" to you too. "; ~ } Math #!/usr/bin/env perl use Acme::Brainfuck; use strict; use warnings; my $answer = +++[>++++++<-]> ; print "3 * 6 = $answer "; VERSION
1.1.1 Apr 06, 2004 AUTHOR
Jaldhar H. Vyas E<lt>jaldhar@braincells.comE<gt> THANKS
Urban Mueller - The inventor of Brainfuck. Damian Conway - For twisting perl to hitherto unimaginable heights of weirdness. Marco Nippula <http://www.hut.fi/~mnippula/> - Some code in this module comes from his brainfuck.pl Mr. Rock - Who has a nice Brainfuck tutorial at <http://www.cydathria.com/bf/>. Some of the example code comes from there. COPYRIGHT AND LICENSE
Copyright (c) 2004, Consolidated Braincells Inc. Licensed with no warranties under the Crowley Public License: "Do what thou wilt shall be the whole of the license." perl v5.8.3 2004-04-06 Acme::Brainfuck(3)
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