Regarding to thread number 5,
Actually I just asking about how to extract only those content that matched with seq_8.
With "thread number 5" I assume you mean this thread: Extract specific content from file? But that is a different thread with a different question.. It's alright Patrick.. but it always helps if you can be as specific as possible...
Hi,
I got a long list of contents:
>sequence_1
ASSSSSSSSSSSDDDDDDDDDDDCCCCCCC
ASDSFDFFDFDFFWERERERERFSDFESFSFD
>sequence_2
ASDFDFDFFDDFFDFDSFDSFDFSDFSDFDSFASDSADSADASD
ASDFFDFDFASFASFASFAFSFFSDASFASFASFAFS
>sequence_3
VEDFGSDGSDGSDGSDGSDGSDGSDG
dDFSDFSDFSDFSDFSDFSDFSDFSDF... (2 Replies)
My input:
Data name: ABC001
Data length: 1000
Detail info
Data Direction Start_time End_time Length
1 forward 10 100 90
1 forward 15 200 185
2 reverse 50 500 450
Data name: XFG110
Data length: 100
Detail info
Data Direction Start_time End_time Length
1 forward 50 100 50 ... (11 Replies)
Input file:
#abc_1
SAASFASFGGDSGDSGDSGSDGSDGSDGSDGSDGSDGSDGDS
Output file:
FASFGGDSGDS
I just want to print out the read from position 5 until position 15 from the data.
Below is the code that I just try but it is failed to get my desired output:
grep -v '#' input_file | awk... (5 Replies)
Bash scripting beginner here...
I have many folders, each folder representing one subject. Not all subjects have all the required files, so I need to somehow cycle through all the data and then extract the data only from subjects who have no files missing. I tried to output the ls command, but... (4 Replies)
data.txt has several information like the below..
<SERVER>:WEB:MYDOM01:/tmp/cong/MYDOM01,/tmp/app/MYDOM01
<WEBER>:CANES:https-web01,https-web02:/web/apps/https-web01/config
<SERVER>:WEB:MYDOM07:/tmp/cong/MYDOM07,/tmp/app/MYDOM07... (7 Replies)
Discussion started by: mohtashims
7 Replies
LEARN ABOUT DEBIAN
git-annex-shell
git-annex-shell(1) General Commands Manual git-annex-shell(1)NAME
git-annex-shell - Restricted login shell for git-annex only SSH access
SYNOPSIS
git-annex-shell [-c] command [params ...]
DESCRIPTION
git-annex-shell is a restricted shell, similar to git-shell, which can be used as a login shell for SSH accounts.
Since its syntax is identical to git-shell's, it can be used as a drop-in replacement anywhere git-shell is used. For example it can be
used as a user's restricted login shell.
COMMANDS
Any command not listed below is passed through to git-shell.
Note that the directory parameter should be an absolute path, otherwise it is assumed to be relative to the user's home directory. Also the
first "/~/" or "/~user/" is expanded to the specified home directory.
configlist directory
This outputs a subset of the git configuration, in the same form as git config --list
inannex directory [key ...]
This checks if all specified keys are present in the annex, and exits zero if so.
dropkey directory [key ...]
This drops the annexed data for the specified keys.
recvkey directory key
This runs rsync in server mode to receive the content of a key, and stores the content in the annex.
sendkey directory key
This runs rsync in server mode to transfer out the content of a key.
commit directory
This commits any staged changes to the git-annex branch. It also runs the annex-content hook.
OPTIONS
Most options are the same as in git-annex. The ones specific to git-annex-shell are:
--uuid=UUID
git-annex uses this to specify the UUID of the repository it was expecting git-annex-shell to access, as a sanity check.
HOOK
After content is received or dropped from the repository by git-annex-shell, it runs a hook, .git/hooks/annex-content (or hooks/annex-con-
tent on a bare repository). The hook is not currently passed any information about what changed.
ENVIRONMENT
GIT_ANNEX_SHELL_READONLY
If set, disallows any command that could modify the repository.
GIT_ANNEX_SHELL_LIMITED
If set, disallows running git-shell to handle unknown commands.
SEE ALSO git-annex(1)git-shell(1)AUTHOR
Joey Hess <joey@kitenet.net>
<http://git-annex.branchable.com/>
git-annex-shell(1)