Sponsored Content
Top Forums Shell Programming and Scripting Extract all the content after a specific data Post 302368857 by patrick87 on Thursday 5th of November 2009 09:58:56 PM
Old 11-05-2009
Thanks a lot, ahmad and sorry for disturbing you Smilie
You're right. All of your command or code work perfectly for my test sequence.
I just found out that I did a careless mistakes when run the code that you suggested Smilie
Really thanks a lot for your help.
My problem is solved finally ^^

---------- Post updated at 08:23 PM ---------- Previous update was at 08:21 PM ----------

Hi Scrutinizer,
Thanks a lot for your suggestion code ^^
Both of your code and ahmad suggested's code work perfectly for my test sequence.
Sorry that my careless mistakes create trouble for you all Smilie

---------- Post updated at 09:53 PM ---------- Previous update was at 08:23 PM ----------

Hi, I just found out that both of your suggested code, will print out all those sequence after seq_8 as well Smilie
Do you got better idea, just let it extract only seq_8 ?
Really thanks for your help ^^

---------- Post updated at 09:58 PM ---------- Previous update was at 09:53 PM ----------

Hi Ahmad,
the same problem as Scrutinizer's code, happen to your suggested code as well Smilie
It will extract all those sequence content after seq_8 as well Smilie
 

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

Shell script or command help to extract specific contents from a long list of content

Hi, I got a long list of contents: >sequence_1 ASSSSSSSSSSSDDDDDDDDDDDCCCCCCC ASDSFDFFDFDFFWERERERERFSDFESFSFD >sequence_2 ASDFDFDFFDDFFDFDSFDSFDFSDFSDFDSFASDSADSADASD ASDFFDFDFASFASFASFAFSFFSDASFASFASFAFS >sequence_3 VEDFGSDGSDGSDGSDGSDGSDGSDG dDFSDFSDFSDFSDFSDFSDFSDFSDF... (2 Replies)
Discussion started by: patrick87
2 Replies

2. Shell Programming and Scripting

Extract specific content from a file

My input file: >sequence_1 ASSSSSSSSSSSDDDDDDDDDDDCCCCCCC ASDSFDFFDFDFFWERERERERFSDFESFSFD >sequence_2 ASDFDFDFFDDFFDFDSFDSFDFSDFSDFDSFASDSADSADASD ASDFFDFDFASFASFASFAFSFFSDASFASFASFAFS >sequence_3 VEDFGSDGSDGSDGSDGSDGSDGSDG dDFSDFSDFSDFSDFSDFSDFSDFSDF SDGFDGSFDGSGSDGSDGSDGSDGSDG My... (22 Replies)
Discussion started by: patrick87
22 Replies

3. Shell Programming and Scripting

Extract specific data content from a long list of data

My input: Data name: ABC001 Data length: 1000 Detail info Data Direction Start_time End_time Length 1 forward 10 100 90 1 forward 15 200 185 2 reverse 50 500 450 Data name: XFG110 Data length: 100 Detail info Data Direction Start_time End_time Length 1 forward 50 100 50 ... (11 Replies)
Discussion started by: patrick87
11 Replies

4. Shell Programming and Scripting

Extract specific read from a data

Input file: #abc_1 SAASFASFGGDSGDSGDSGSDGSDGSDGSDGSDGSDGSDGDS Output file: FASFGGDSGDS I just want to print out the read from position 5 until position 15 from the data. Below is the code that I just try but it is failed to get my desired output: grep -v '#' input_file | awk... (5 Replies)
Discussion started by: patrick87
5 Replies

5. Shell Programming and Scripting

Way to extract detail and its content above specific value problem asking

Input file: >position_10 sample:68711 coords:5453-8666 number:3 type:complete len:344 MSINQYSSDFHYHSLMWQQQQQQQQHQNDVVEEKEALFEKPLTPSDVGKLNRLVIPKQHA ERYFPLAAAAADAVEKGLLLCFEDEEGKPWRFRYSYWNSSQSYVLTKGWSRYVKEKHLDA NRTS* >position_4 sample:68711 coords:553-866 number:4 type:partial len:483... (7 Replies)
Discussion started by: patrick87
7 Replies

6. Shell Programming and Scripting

Extract specific content from data and rename its header problem asking

Input file 1: >pattern_5 GAATTCGTTCATGTAGGTTGASDASFGDSGRTYRYGHDGSDFGSDGGDSGSDGSDFGSDF ATTTAATTATGATTCATACGTCATATGTTATTATTCAATCGTATAAAATTATGTGACCTT SDFSDGSDFKSDAFLKJASLFJASKLFSJAKJFHASJKFHASJKFHASJKFHSJAKFHAW >pattern_1 AAGTCTTAAGATATCACCGTCGATTAGGTTTATACAGCTTTTGTGTTATTTAAATTTGAC... (10 Replies)
Discussion started by: patrick87
10 Replies

7. Shell Programming and Scripting

Extract specific data and change its arrangment

Input: HS04636 PROGRAM source 836 7001 + ID=g1 HS04636 PROGRAM beginner 836 7001 + ID=g1.t1;Parent=g1 HS04636 PROGRAM position 836 836 + Parent=g1.t1 HS04636 PROGRAM type 836 1017 + Parent=g1.t1 HS04636 ... (2 Replies)
Discussion started by: patrick87
2 Replies

8. Shell Programming and Scripting

Extract all content that match exactly only specific word

Input: 21 templeta parent 35718 36554 . - . ID=parent_cluster_50.21.11; Name=Partial%20parent%20for%20training%20set; 21 templeta kids 35718 36554 . - . ID=_52; Parent=parent_cluster_5085.21.11; 21 templeta ... (7 Replies)
Discussion started by: patrick87
7 Replies

9. Shell Programming and Scripting

How to extract specific data?

Bash scripting beginner here... I have many folders, each folder representing one subject. Not all subjects have all the required files, so I need to somehow cycle through all the data and then extract the data only from subjects who have no files missing. I tried to output the ls command, but... (4 Replies)
Discussion started by: LeftoverStew
4 Replies

10. Shell Programming and Scripting

How-To Extract specific data from a file.

data.txt has several information like the below.. <SERVER>:WEB:MYDOM01:/tmp/cong/MYDOM01,/tmp/app/MYDOM01 <WEBER>:CANES:https-web01,https-web02:/web/apps/https-web01/config <SERVER>:WEB:MYDOM07:/tmp/cong/MYDOM07,/tmp/app/MYDOM07... (7 Replies)
Discussion started by: mohtashims
7 Replies
Mojo::Content(3pm)					User Contributed Perl Documentation					Mojo::Content(3pm)

NAME
Mojo::Content - HTTP 1.1 content base class SYNOPSIS
use Mojo::Base 'Mojo::Content'; DESCRIPTION
Mojo::Content is an abstract base class for HTTP 1.1 content as described in RFC 2616. EVENTS
Mojo::Content can emit the following events. "drain" $content->on(drain => sub { my ($content, $offset) = @_; ... }); Emitted once all data has been written. $content->on(drain => sub { my $content = shift; $content->write_chunk(time); }); "body" $content->on(body => sub { my $content = shift; ... }); Emitted once all headers have been parsed and the body starts. $content->on(body => sub { my $content = shift; $content->auto_upgrade(0) if $content->headers->header('X-No-MultiPart'); }); "read" $content->on(read => sub { my ($content, $chunk) = @_; ... }); Emitted when a new chunk of content arrives. $content->unsubscribe('read'); $content->on(read => sub { my ($content, $chunk) = @_; say "Streaming: $chunk"; }); ATTRIBUTES
Mojo::Content implements the following attributes. "auto_relax" my $relax = $content->auto_relax; $content = $content->auto_relax(1); Try to detect broken web servers and turn on relaxed parsing automatically. "headers" my $headers = $content->headers; $content = $content->headers(Mojo::Headers->new); Content headers, defaults to a Mojo::Headers object. "max_leftover_size" my $size = $content->max_leftover_size; $content = $content->max_leftover_size(1024); Maximum size in bytes of buffer for pipelined HTTP requests, defaults to the value of the "MOJO_MAX_LEFTOVER_SIZE" environment variable or 262144. "relaxed" my $relaxed = $content->relaxed; $content = $content->relaxed(1); Activate relaxed parsing for HTTP 0.9 and responses that are terminated with a connection close. METHODS
Mojo::Content inherits all methods from Mojo::EventEmitter and implements the following new ones. "body_contains" my $success = $content->body_contains('foo bar baz'); Check if content contains a specific string. Meant to be overloaded in a subclass. "body_size" my $size = $content->body_size; Content size in bytes. Meant to be overloaded in a subclass. "boundary" my $boundary = $content->boundary; Extract multipart boundary from "Content-Type" header. "build_body" my $string = $content->build_body; Render whole body. "build_headers" my $string = $content->build_headers; Render all headers. "charset" my $charset = $content->charset; Extract charset from "Content-Type" header. "clone" my $clone = $content->clone; Clone content if possible, otherwise return "undef". "generate_body_chunk" my $chunk = $content->generate_body_chunk(0); Generate dynamic content. "get_body_chunk" my $chunk = $content->get_body_chunk(0); Get a chunk of content starting from a specfic position. Meant to be overloaded in a subclass. "get_header_chunk" my $chunk = $content->get_header_chunk(13); Get a chunk of the headers starting from a specfic position. "has_leftovers" my $success = $content->has_leftovers; Check if there are leftovers. "header_size" my $size = $content->header_size; Size of headers in bytes. "is_chunked" my $success = $content->is_chunked; Check if content is chunked. "is_dynamic" my $success = $content->is_dynamic; Check if content will be dynamically generated, which prevents "clone" from working. "is_finished" my $success = $content->is_finished; Check if parser is finished. "is_multipart" my $false = $content->is_multipart; False. "is_parsing_body" my $success = $content->is_parsing_body; Check if body parsing started yet. "leftovers" my $bytes = $content->leftovers; Get leftover data from content parser. "parse" $content = $content->parse("Content-Length: 12 Hello World!"); Parse content chunk. "parse_body" $content = $content->parse_body("Hi!"); Parse body chunk. "parse_body_once" $content = $content->parse_body_once("Hi!"); Parse body chunk once. "parse_until_body" $content = $content->parse_until_body("Content-Length: 12 Hello World!"); Parse chunk and stop after headers. "progress" my $size = $content->progress; Size of content already received from message in bytes. "write" $content->write('Hello!'); $content->write('Hello!', sub {...}); Write dynamic content non-blocking, the optional drain callback will be invoked once all data has been written. "write_chunk" $content->write_chunk('Hello!'); $content->write_chunk('Hello!', sub {...}); Write dynamic content non-blocking with "chunked" transfer encoding, the optional drain callback will be invoked once all data has been written. SEE ALSO
Mojolicious, Mojolicious::Guides, <http://mojolicio.us>. perl v5.14.2 2012-09-05 Mojo::Content(3pm)
All times are GMT -4. The time now is 12:50 AM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy