This code in UNIX but if you have virtual machine on windows (Linux system) you can use it ....also instead of nawk (if not available) you can use gawk or /usr/xpg4/bin/awk...
Output file template format
<input_file_name>a</input_file_name>
<total_length_size>b</total_length_size>
<log_10_length_size>c</log_10_length_size>
Input_file_1 (eg. sample.txt)
SDFSDGDGSFGRTREREYWW
Parameter:
a is equal to the input file name
b is equal to the total length of... (2 Replies)
Hi All,
I have two input file and need to generate a CSV file. The existing report just "GREP" the records with the Header and Tailer records with the count of records.
Now i need to split the data into 25 records each in the same CSV file.
id_file (Input file )
227050994
232510151... (4 Replies)
Hi, I want to list all file that match user input ( specified shell wildcard) but when I compile it dont list me
#!/usr/bin/perl -w
print "Enter Advance Search Function: ";
chomp ($func = <STDIN>);
my @files = glob("$func");
foreach my $file (@files)
{
print "$file\n";... (1 Reply)
Hi All,
how can i edit my original data and add more data if my 2nd script outputs SUCESS?
ex.
input file:
1.txt
nik,is,the
1script.sh
if 2ndscript.sh output SUCCESS then i'm going to edit my input file and add data best,pogi..
sample outputdata.
nik,is,the,best,pogi
2ndscript.sh... (3 Replies)
Hello,
I'm trying to figure out how best to approach this script, and I have very little experience, so I could use all the help I can get. :wall:
I regularly need to delete files from many directories.
A file with the same name may exist any number of times in different subdirectories.... (3 Replies)
Dear experts,
I am new to linux programming. I have a shell script which i should run it on all my samples.
I only define input and out put for this script. The inputs are 3 numbers(coordination numbers) which are available in a series of text file.
Since i have a lots of samples, it takes a... (5 Replies)
I have a file with class c IP addresses that I need to match to a column and print the matching lines of another file.
I started playing with grep -if file01.out file02.out but I am stuck as to how to match it to a column and print the matching lines;
cat file01.out
10.150.140... (5 Replies)
The below awk improved bu @MadeInGermany, works great as long as the input file has data in it in the below format:
input
chrX 25031028 25031925 chrX:25031028-25031925 ARX 631 18
chrX 25031028 25031925 chrX:25031028-25031925 ARX 632 14... (3 Replies)
i have written my shell script in notepad however i am struggling to pass the data file to be read to the script the data file is of .txt format. My target is to run the shell script from the terminal and pass 3 arguments e.g. polg@DESKTOP-BVPDC5C:~/CS1420/coursework$ bash valsplit.sh input.txt... (11 Replies)
Discussion started by: Gurdza32
11 Replies
LEARN ABOUT DEBIAN
bp_dbsplit
BP_DBSPLIT(1p) User Contributed Perl Documentation BP_DBSPLIT(1p)NAME
dbsplit - script to split an input set of database(s) into smaller pieces
SYNOPSIS
dbsplit.PLS --size 50 [-i inputfile] [-if inputformat] [-of outputformat]
[--prefix outputprefix] [ < file1 file 2 OR file1 file2]
DESCRIPTION
This script will take as input a list of filenames or a single file or from STDIN a sequence database and split the database into separate
files of X numbers of sequences. You specify X with the "--size/-s" parameter. The input and output sequence format is any that is
supported by bioperl (fasta,embl,genbank,gcg, swissprot, etc).
You can specify the input data either as a single file with -i filename, or as a single file as an argument like
% dbsplit file1 file2
or as a list of sequence data with
% cat file1 file2 file3 | dbsplit
You'll want to use the "--prefix" to specify what the output prefix will be.
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHOR
Jason Stajich, jason-at-bioperl-dot-org
perl v5.14.2 2012-03-02 BP_DBSPLIT(1p)