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Top Forums Shell Programming and Scripting line 5: [: -gt: unary operator expected Post 302367475 by methyl on Monday 2nd of November 2009 07:16:04 PM
Old 11-02-2009
As other posters imply, what is the response to typing this command at the same place where you might execute the script? The error message implies that the response is not a number.
Quote:
awk 'END {print NR}' ecoli_operons
Knowing the Operating System and version would help.
Clutching at straws and if the above command does not give an error message.
1) The environment variable $LINES is reserved in all modern shells. Though I have no factual reason to suggest this, you could try another name for the variable $lines.
2) A script edited on a MSDOS and ported to unix without proper text file conversion could misbehave like this.
3) The trailing semi-colon on "while [ $lines -gt 0 ];" is surplus.
4) How big is the file? Is $lines a very large number (> 2x1024x1024x1024) ?

Last edited by methyl; 11-02-2009 at 08:50 PM..
 

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Ops(3)							User Contributed Perl Documentation						    Ops(3)

NAME
PDL::Ops - Fundamental mathematical operators DESCRIPTION
This module provides the functions used by PDL to overload the basic mathematical operators ("+ - / *" etc.) and functions ("sin sqrt" etc.) It also includes the function "log10", which should be a perl function so that we can overload it! Matrix multiplication (the operator "x") is handled by the module PDL::Primitive. SYNOPSIS
none FUNCTIONS
plus Signature: (a(); b(); [o]c(); int swap) add two piddles $c = plus $a, $b, 0; # explicit call with trailing 0 $c = $a + $b; # overloaded call $a->inplace->plus($b,0); # modify $a inplace It can be made to work inplace with the "$a->inplace" syntax. This function is used to overload the binary "+" operator. Note that when calling this function explicitly you need to supply a third argument that should generally be zero (see first example). This restriction is expected to go away in future releases. plus does handle bad values. The state of the bad-value flag of the output piddles is unknown. mult Signature: (a(); b(); [o]c(); int swap) multiply two piddles $c = mult $a, $b, 0; # explicit call with trailing 0 $c = $a * $b; # overloaded call $a->inplace->mult($b,0); # modify $a inplace It can be made to work inplace with the "$a->inplace" syntax. This function is used to overload the binary "*" operator. Note that when calling this function explicitly you need to supply a third argument that should generally be zero (see first example). This restriction is expected to go away in future releases. mult does handle bad values. The state of the bad-value flag of the output piddles is unknown. minus Signature: (a(); b(); [o]c(); int swap) subtract two piddles $c = minus $a, $b, 0; # explicit call with trailing 0 $c = $a - $b; # overloaded call $a->inplace->minus($b,0); # modify $a inplace It can be made to work inplace with the "$a->inplace" syntax. This function is used to overload the binary "-" operator. Note that when calling this function explicitly you need to supply a third argument that should generally be zero (see first example). This restriction is expected to go away in future releases. minus does handle bad values. The state of the bad-value flag of the output piddles is unknown. divide Signature: (a(); b(); [o]c(); int swap) divide two piddles $c = divide $a, $b, 0; # explicit call with trailing 0 $c = $a / $b; # overloaded call $a->inplace->divide($b,0); # modify $a inplace It can be made to work inplace with the "$a->inplace" syntax. This function is used to overload the binary "/" operator. Note that when calling this function explicitly you need to supply a third argument that should generally be zero (see first example). This restriction is expected to go away in future releases. divide does handle bad values. The state of the bad-value flag of the output piddles is unknown. gt Signature: (a(); b(); [o]c(); int swap) the binary > (greater than) operation $c = gt $a, $b, 0; # explicit call with trailing 0 $c = $a > $b; # overloaded call $a->inplace->gt($b,0); # modify $a inplace It can be made to work inplace with the "$a->inplace" syntax. This function is used to overload the binary ">" operator. Note that when calling this function explicitly you need to supply a third argument that should generally be zero (see first example). This restriction is expected to go away in future releases. gt does handle bad values. The state of the bad-value flag of the output piddles is unknown. lt Signature: (a(); b(); [o]c(); int swap) the binary < (less than) operation $c = lt $a, $b, 0; # explicit call with trailing 0 $c = $a < $b; # overloaded call $a->inplace->lt($b,0); # modify $a inplace It can be made to work inplace with the "$a->inplace" syntax. This function is used to overload the binary "<" operator. Note that when calling this function explicitly you need to supply a third argument that should generally be zero (see first example). This restriction is expected to go away in future releases. lt does handle bad values. The state of the bad-value flag of the output piddles is unknown. le Signature: (a(); b(); [o]c(); int swap) the binary <= (less equal) operation $c = le $a, $b, 0; # explicit call with trailing 0 $c = $a <= $b; # overloaded call $a->inplace->le($b,0); # modify $a inplace It can be made to work inplace with the "$a->inplace" syntax. This function is used to overload the binary "<=" operator. Note that when calling this function explicitly you need to supply a third argument that should generally be zero (see first example). This restriction is expected to go away in future releases. le does handle bad values. The state of the bad-value flag of the output piddles is unknown. ge Signature: (a(); b(); [o]c(); int swap) the binary >= (greater equal) operation $c = ge $a, $b, 0; # explicit call with trailing 0 $c = $a >= $b; # overloaded call $a->inplace->ge($b,0); # modify $a inplace It can be made to work inplace with the "$a->inplace" syntax. This function is used to overload the binary ">=" operator. Note that when calling this function explicitly you need to supply a third argument that should generally be zero (see first example). This restriction is expected to go away in future releases. ge does handle bad values. The state of the bad-value flag of the output piddles is unknown. eq Signature: (a(); b(); [o]c(); int swap) binary equal to operation ("==") $c = eq $a, $b, 0; # explicit call with trailing 0 $c = $a == $b; # overloaded call $a->inplace->eq($b,0); # modify $a inplace It can be made to work inplace with the "$a->inplace" syntax. This function is used to overload the binary "==" operator. Note that when calling this function explicitly you need to supply a third argument that should generally be zero (see first example). This restriction is expected to go away in future releases. eq does handle bad values. The state of the bad-value flag of the output piddles is unknown. ne Signature: (a(); b(); [o]c(); int swap) binary not equal to operation ("!=") $c = ne $a, $b, 0; # explicit call with trailing 0 $c = $a != $b; # overloaded call $a->inplace->ne($b,0); # modify $a inplace It can be made to work inplace with the "$a->inplace" syntax. This function is used to overload the binary "!=" operator. Note that when calling this function explicitly you need to supply a third argument that should generally be zero (see first example). This restriction is expected to go away in future releases. ne does handle bad values. The state of the bad-value flag of the output piddles is unknown. shiftleft Signature: (a(); b(); [o]c(); int swap) leftshift "a$" by $b $c = shiftleft $a, $b, 0; # explicit call with trailing 0 $c = $a << $b; # overloaded call $a->inplace->shiftleft($b,0); # modify $a inplace It can be made to work inplace with the "$a->inplace" syntax. This function is used to overload the binary "<<" operator. Note that when calling this function explicitly you need to supply a third argument that should generally be zero (see first example). This restriction is expected to go away in future releases. shiftleft does handle bad values. The state of the bad-value flag of the output piddles is unknown. shiftright Signature: (a(); b(); [o]c(); int swap) leftshift "a$" by $b $c = shiftright $a, $b, 0; # explicit call with trailing 0 $c = $a >> $b; # overloaded call $a->inplace->shiftright($b,0); # modify $a inplace It can be made to work inplace with the "$a->inplace" syntax. This function is used to overload the binary ">>" operator. Note that when calling this function explicitly you need to supply a third argument that should generally be zero (see first example). This restriction is expected to go away in future releases. shiftright does handle bad values. The state of the bad-value flag of the output piddles is unknown. or2 Signature: (a(); b(); [o]c(); int swap) binary or of two piddles $c = or2 $a, $b, 0; # explicit call with trailing 0 $c = $a | $b; # overloaded call $a->inplace->or2($b,0); # modify $a inplace It can be made to work inplace with the "$a->inplace" syntax. This function is used to overload the binary "|" operator. Note that when calling this function explicitly you need to supply a third argument that should generally be zero (see first example). This restriction is expected to go away in future releases. or2 does handle bad values. The state of the bad-value flag of the output piddles is unknown. and2 Signature: (a(); b(); [o]c(); int swap) binary and of two piddles $c = and2 $a, $b, 0; # explicit call with trailing 0 $c = $a & $b; # overloaded call $a->inplace->and2($b,0); # modify $a inplace It can be made to work inplace with the "$a->inplace" syntax. This function is used to overload the binary "&" operator. Note that when calling this function explicitly you need to supply a third argument that should generally be zero (see first example). This restriction is expected to go away in future releases. and2 does handle bad values. The state of the bad-value flag of the output piddles is unknown. xor Signature: (a(); b(); [o]c(); int swap) binary exclusive or of two piddles $c = xor $a, $b, 0; # explicit call with trailing 0 $c = $a ^ $b; # overloaded call $a->inplace->xor($b,0); # modify $a inplace It can be made to work inplace with the "$a->inplace" syntax. This function is used to overload the binary "^" operator. Note that when calling this function explicitly you need to supply a third argument that should generally be zero (see first example). This restriction is expected to go away in future releases. xor does handle bad values. The state of the bad-value flag of the output piddles is unknown. bitnot Signature: (a(); [o]b()) unary bit negation $b = ~ $a; $a->inplace->bitnot; # modify $a inplace It can be made to work inplace with the "$a->inplace" syntax. This function is used to overload the unary "~" operator/function. bitnot does handle bad values. It will set the bad-value flag of all output piddles if the flag is set for any of the input piddles. power Signature: (a(); b(); [o]c(); int swap) raise piddle $a to the power "b" $c = $a->power($b,0); # explicit function call $c = $a ** $b; # overloaded use $a->inplace->power($b,0); # modify $a inplace It can be made to work inplace with the "$a->inplace" syntax. This function is used to overload the binary "**" function. Note that when calling this function explicitly you need to supply a third argument that should generally be zero (see first example). This restriction is expected to go away in future releases. power does handle bad values. The state of the bad-value flag of the output piddles is unknown. atan2 Signature: (a(); b(); [o]c(); int swap) elementwise "atan2" of two piddles $c = $a->atan2($b,0); # explicit function call $c = atan2 $a, $b; # overloaded use $a->inplace->atan2($b,0); # modify $a inplace It can be made to work inplace with the "$a->inplace" syntax. This function is used to overload the binary "atan2" function. Note that when calling this function explicitly you need to supply a third argument that should generally be zero (see first example). This restriction is expected to go away in future releases. atan2 does handle bad values. The state of the bad-value flag of the output piddles is unknown. modulo Signature: (a(); b(); [o]c(); int swap) elementwise "modulo" operation $c = $a->modulo($b,0); # explicit function call $c = $a % $b; # overloaded use $a->inplace->modulo($b,0); # modify $a inplace It can be made to work inplace with the "$a->inplace" syntax. This function is used to overload the binary "%" function. Note that when calling this function explicitly you need to supply a third argument that should generally be zero (see first example). This restriction is expected to go away in future releases. modulo does handle bad values. The state of the bad-value flag of the output piddles is unknown. spaceship Signature: (a(); b(); [o]c(); int swap) elementwise "<=>" operation $c = $a->spaceship($b,0); # explicit function call $c = $a <=> $b; # overloaded use $a->inplace->spaceship($b,0); # modify $a inplace It can be made to work inplace with the "$a->inplace" syntax. This function is used to overload the binary "<=>" function. Note that when calling this function explicitly you need to supply a third argument that should generally be zero (see first example). This restriction is expected to go away in future releases. spaceship does handle bad values. The state of the bad-value flag of the output piddles is unknown. sqrt Signature: (a(); [o]b()) elementwise square root $b = sqrt $a; $a->inplace->sqrt; # modify $a inplace It can be made to work inplace with the "$a->inplace" syntax. This function is used to overload the unary "sqrt" operator/function. sqrt does handle bad values. It will set the bad-value flag of all output piddles if the flag is set for any of the input piddles. abs Signature: (a(); [o]b()) elementwise absolute value $b = abs $a; $a->inplace->abs; # modify $a inplace It can be made to work inplace with the "$a->inplace" syntax. This function is used to overload the unary "abs" operator/function. abs does handle bad values. It will set the bad-value flag of all output piddles if the flag is set for any of the input piddles. sin Signature: (a(); [o]b()) the sin function $b = sin $a; $a->inplace->sin; # modify $a inplace It can be made to work inplace with the "$a->inplace" syntax. This function is used to overload the unary "sin" operator/function. sin does handle bad values. It will set the bad-value flag of all output piddles if the flag is set for any of the input piddles. cos Signature: (a(); [o]b()) the cos function $b = cos $a; $a->inplace->cos; # modify $a inplace It can be made to work inplace with the "$a->inplace" syntax. This function is used to overload the unary "cos" operator/function. cos does handle bad values. It will set the bad-value flag of all output piddles if the flag is set for any of the input piddles. not Signature: (a(); [o]b()) the elementwise not operation $b = ! $a; $a->inplace->not; # modify $a inplace It can be made to work inplace with the "$a->inplace" syntax. This function is used to overload the unary "!" operator/function. not does handle bad values. It will set the bad-value flag of all output piddles if the flag is set for any of the input piddles. exp Signature: (a(); [o]b()) the exponential function $b = exp $a; $a->inplace->exp; # modify $a inplace It can be made to work inplace with the "$a->inplace" syntax. This function is used to overload the unary "exp" operator/function. exp does handle bad values. It will set the bad-value flag of all output piddles if the flag is set for any of the input piddles. log Signature: (a(); [o]b()) the natural logarithm $b = log $a; $a->inplace->log; # modify $a inplace It can be made to work inplace with the "$a->inplace" syntax. This function is used to overload the unary "log" operator/function. log does handle bad values. It will set the bad-value flag of all output piddles if the flag is set for any of the input piddles. log10 Signature: (a(); [o]b()) the base 10 logarithm $b = log10 $a; $a->inplace->log10; # modify $a inplace It can be made to work inplace with the "$a->inplace" syntax. This function is used to overload the unary "log10" operator/function. log10 does handle bad values. It will set the bad-value flag of all output piddles if the flag is set for any of the input piddles. assgn Signature: (a(); [o]b()) Plain numerical assignment. This is used to implement the ".=" operator assgn does not process bad values. It will set the bad-value flag of all output piddles if the flag is set for any of the input piddles. AUTHOR
Tuomas J. Lukka (lukka@fas.harvard.edu), Karl Glazebrook (kgb@aaoepp.aao.gov.au), Doug Hunt (dhunt@ucar.edu), Christian Soeller (c.soeller@auckland.ac.nz), Doug Burke (burke@ifa.hawaii.edu), and Craig DeForest (deforest@boulder.swri.edu). perl v5.12.1 2010-07-05 Ops(3)
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