Hello,
I have a file like this..
I need to sort this file ascending on the last column.
Then, I need an output with two columns.
First col. with only the words that start with SNP_A and the the next column with the word found in the right of the column with SNP_A.
e.g output
SNP_A-2086192 rs16854601
SNP_A-8405097 rs16874223
Can you show me howto with awk?
I'm working with a set of files where I'm trying to remove a set of characters from specific fields. The files are comma-delimited, and the characters I want to remove include:
- open parentheses - (
- close parentheses - )
- space followed by a dollar sign - $
I don't want to remove every... (1 Reply)
I'm still beginner and maybe someone can help me.
I have this input:
the great warrior a, b, c
and what i want to know is, with awk, how can i detect the string with 'warrior' string on it and print the a, b, and c seperately, become like this :
Warrior Type
a
b
c
Im still very... (3 Replies)
Hello,
i need help with awk.
I have this file:
cat number
DirB port 67 er_enc_out 0 er_bad_os 0
DirB port 71 er_enc_out 56 er_bad_os 0
DirB port 74 er_enc_out 0 er_bad_os 0
DirB port 75 ... (4 Replies)
Hi
I have a file which is tab-delimited. Now, I'd like to print the lines which have "chr6" string in both first and second columns. Could anybody help? (3 Replies)
Hello....
Pls help me (and sorry my english) :)
So
I have a file (test.txt) with 1 long line.... for example:
isgc jsfh udgf osff 8462 error iwzr 653 idchisfb isfbisfb sihfjfeb isfhsi gcz eifh
How to print after the "error" word the 2nd 4th 5th and 7th word??
output well be:
653 isfbisfb... (2 Replies)
Hi,
My file has a numerous sttrings.I want to retain those strings which start with stt and delete entries with >C
For eg:
my infile is
>C4603985... (7 Replies)
Hello
I have a log file with thousands of lines like below
Sep 21 13:02:52 lnxtst01 kernel: New TCP in: IN=eth0 OUT= MAC=00:1a:4b:50:b7:32:00:08:e3:ff:fc:04:08:00 SRC=10.184.46.4 DST=10.162.139.21 LEN=60 TOS=0x00 PREC=0x00 TTL=59 ID=52961 DF PROTO=TCP SPT=55688 DPT=22 WINDOW=5840 RES=0x00 SYN... (3 Replies)
Discussion started by: magnus29
3 Replies
LEARN ABOUT DEBIAN
tmscore
TMSCORE(1) General Commands Manual TMSCORE(1)NAME
TM-score - an algorithm to calculate the similarity of topologies of two protein structures
VERSION
This documentation refers to TM-score version released on 2011/01/30
SYNOPSIS
1. Run TM-score to compare 'model' and 'native':
TMscore model native
2. Run TM-score with an assigned d0, e.g. 5 Angstroms:
TMscore model native -d 5
3. Run TM-score with superposition output, e.g. 'TM.sup', and view in Rasmol:
TMscore model native -o TM.sup
rasmol -script TM.sup
DESCRIPTION
This program is to compare two protein structures and identify the best superposition that has the highest TM-score. Input structures must
be in the PDB format. By default, TM-score is normalized by the second protein. Users can obtain a brief instruction by simply running the
program without arguments.
OPTIONS -o filename.sup Outputs the superposition to the specified file,
suitable for use in rasmol.
-d value Sets d0 to the specified number of angstroms.
SEE ALSO
TMalign, rasmol
When using this proram and for more detailed information, please refer to the publication in NucleicAcidsRes. (2005) Volume 33 page
2303ff. by Zhang and Skolnick.
AUTHOR
For comments/suggestions,please contact email: zhng@umich.edu.
This manpage was compiled by Tim Booth (tbooth@ceh.ac.uk)
. 2011-02-03 TMSCORE(1)