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Full Discussion: Column problems with vi
Top Forums UNIX for Dummies Questions & Answers Column problems with vi Post 302340470 by aistiby on Monday 3rd of August 2009 01:01:05 PM
Old 08-03-2009
Column problems with vi

Basically I have a very large amount of genetic data in the format

marker_ID Species marker_ID marker_ID Parent1 Parent2 Sex Genotype

As you can see the data I have has marker_ID listed 3 times, I need to get rid of colum one and column three (both titled marker_ID). There are thousands of rows and columns and doing this by hand would probably take me all day.
I need to change the format in order to run this data in Plink, a whole genome association tool.
I have looked at similar posts and I dont think they are relevant as they do not need to delete 2 different columns.

The genotype column is actually over 24,000 columns as that is the genetic information - didnt explain that very well hence first reply

Thanks

Last edited by aistiby; 08-03-2009 at 02:44 PM..
 

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CUBRID_NEXT_RESULT(3)							 1						     CUBRID_NEXT_RESULT(3)

cubrid_next_result - Get result of next query when executing multiple SQL statements

SYNOPSIS
bool cubrid_next_result (resource $result) DESCRIPTION
The cubrid_next_result(3) function is used to get results of next query if multiple SQL statements are executed and CUBRID_EXEC_QUERY_ALL flag is set upon cubrid_execute(3). PARAMETERS
o $result -$result comes from a call to cubrid_execute(3) RETURN VALUES
TRUE, when process is successful. FALSE, when process is unsuccessful. EXAMPLES
Example #1 cubrid_next_result(3) example <?php $conn = cubrid_connect("127.0.0.1", 33000, "demodb", "dba"); $sql_stmt = "SELECT * FROM code; SELECT * FROM history WHERE host_year=2004 AND event_code=20281"; $res = cubrid_execute($conn, $sql_stmt, CUBRID_EXEC_QUERY_ALL); get_result_info($res); cubrid_next_result($res); get_result_info($res); function get_result_info($req) { printf(" ------------ get_result_info -------------------- "); $row_num = cubrid_num_rows($req); $col_num = cubrid_num_cols($req); $column_name_list = cubrid_column_names($req); $column_type_list = cubrid_column_types($req); $column_last_name = cubrid_field_name($req, $col_num - 1); $column_last_table = cubrid_field_table($req, $col_num - 1); $column_last_type = cubrid_field_type($req, $col_num - 1); $column_last_len = cubrid_field_len($req, $col_num - 1); $column_1_flags = cubrid_field_flags($req, 1); printf("%-30s %d ", "Row count:", $row_num); printf("%-30s %d ", "Column count:", $col_num); printf(" "); printf("%-30s %-30s %-15s ", "Column Names", "Column Types", "Column Len"); printf("------------------------------------------------------------------------------ "); $size = count($column_name_list); for($i = 0; $i < $size; $i++) { $column_len = cubrid_field_len($req, $i); printf("%-30s %-30s %-15s ", $column_name_list[$i], $column_type_list[$i], $column_len); } printf(" "); printf("%-30s %s ", "Last Column Name:", $column_last_name); printf("%-30s %s ", "Last Column Table:", $column_last_table); printf("%-30s %s ", "Last Column Type:", $column_last_type); printf("%-30s %d ", "Last Column Len:", $column_last_len); printf("%-30s %s ", "Second Column Flags:", $column_1_flags); printf(" "); } ?> The above example will output: ------------ get_result_info -------------------- Row count: 6 Column count: 2 Column Names Column Types Column Len ------------------------------------------------------------------------------ s_name char 1 f_name varchar 6 Last Column Name: f_name Last Column Table: code Last Column Type: varchar Last Column Len: 6 Second Column Flags: ------------ get_result_info -------------------- Row count: 4 Column count: 5 Column Names Column Types Column Len ------------------------------------------------------------------------------ event_code integer 11 athlete varchar 40 host_year integer 11 score varchar 10 unit varchar 5 Last Column Name: unit Last Column Table: history Last Column Type: varchar Last Column Len: 5 Second Column Flags: not_null primary_key unique_key SEE ALSO
cubrid_execute(3). PHP Documentation Group CUBRID_NEXT_RESULT(3)
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