04-08-2009
quirkasaurus, that works great.
I've never used a key holding mechanism so thanks. I am sure I will find a lot of uses for it going forward. I really appreciate your help.
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I am trying to write an awk program to reformat a data table and convert the date to julian time. I have all the individual steps working, but I am having some issues joing them into one program. Can anyone help me out? Here is my code so far:
# This is an awk program to convert the dates from... (4 Replies)
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Can anyone help me with a shell script that can do the following:
I have a data in fasta format (first line is the header, followed by a sequence of characters).
>ALLLY
GGCCCCTCGAGCCTCGAACCGGAACCTCCAAATCCGAGACGCTCTGCTTATGAGGACCTC
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I have a file which have data like
A.txt
a
1Jan I am in a1.
1Jan I was born.
2Jan I am here.
3Jan I am in a3.
b
1Jan I am in b1.
c
2Jan I am in c2.
d
2Jan I am in d2.
5jan I am in d5.
date in the file might be vary evertime. (9 Replies)
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4. Shell Programming and Scripting
Hi,
I am writing just to share my appreciation for help I have received from this site in the past.
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5. Shell Programming and Scripting
input file:
hsa-miR-4726-5p
Score
hsa-miR-483-5p
Score
hsa-miR-125b-2*
Score
hsa-miR-4492
hsa-miR-4508
hsa-miR-4486
Score
Desired output file:
hsa-miR-4726-5p Score hsa-miR-483-5p Score hsa-miR-125b-2* Score hsa-miR-4492 hsa-miR-4508 hsa-miR-4486 Score ... (6 Replies)
Discussion started by: perl_beginner
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6. Shell Programming and Scripting
Input file:
58227131
50087390
57339526
40578034
65348841
55614853
64363217
44178559
Desired output file:
58227131 50087390
57339526 40578034
65348841 55614853
64363217 44178559
Command that I try: (4 Replies)
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7. Shell Programming and Scripting
I am helping my wife set up a real estate site and I am starting to integrate MLS listings. We are using a HostGator level 5 VPS running CentOS and have full root and SSH access to the VPS.
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Input file:
dependent general_process
dependent general_process
regulation general_process
- -
template component
food component
binding data_rearrangement
binding data_rearrangement
specific_activity data_rearrangement
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Input file:
bv|111259484|pir||T49736_real_data
bv|159484|pir||T9736_data_figure
bv|113584|prf|T4736|truth
bv|113584|pir||T4736_truth
Desired output:
bv|111259484|pir|T49736|real_data
bv|159484|pir|T9736|data_figure
bv|113584|prf|T4736|truth
bv|113584|pir|T4736|truth
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Input file
4CL1 O24145 CoA1
4CL1 P31684 CoA1
4CL1 Q54P77 CoA_1
73 O36421 Unknown
4CL3 Q9S777 coumarate
4CL3 Q54P79 coumarate
4CL3 QP7932 coumarate
Desired output result
4CL1 O24145#P31684 CoA1
4CL1 Q54P77 CoA_1
73 O36421 Unknown
4CL3 Q9S777#Q54P79#QP7932 coumarate
I... (5 Replies)
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LEARN ABOUT MOJAVE
perlio::via::dynamic
dynamic(3) User Contributed Perl Documentation dynamic(3)
NAME
PerlIO::via::dynamic - dynamic PerlIO layers
SYNOPSIS
open $fh, $fname;
$p = PerlIO::via::dynamic->new
(translate =>
sub { $_[1] =~ s/$Filename[:ws-./\]*$/$Filename: $fname$/e},
untranslate =>
sub { $_[1] =~ s/$Filename[:ws-./\]*$/$Filename$/});
$p->via ($fh);
binmode $fh, $p->via; # deprecated
DESCRIPTION
"PerlIO::via::dynamic" is used for creating dynamic PerlIO layers. It is useful when the behavior or the layer depends on variables. You
should not use this module as via layer directly (ie :via(dynamic)).
Use the constructor to create new layers, with two arguments: translate and untranslate. Then use "$p-"via ($fh)> to wrap the handle. Once
<$fh> is destroyed, the temporary namespace for the IO layer will be removed.
Note that PerlIO::via::dynamic uses the scalar fields to reference to the object representing the dynamic namespace.
OPTIONS
translate
A function that translate buffer upon write.
untranslate
A function that translate buffer upon read.
use_read
Use "READ" instead of "FILL" for the layer. Useful when caller expect exact amount of data from read, and the "untranslate" function
might return different length.
By default "PerlIO::via::dynamic" creates line-based layer to make "translate" implementation easier.
AUTHORS
Chia-liang Kao <clkao@clkao.org>
COPYRIGHT
Copyright 2004 by Chia-liang Kao <clkao@clkao.org>.
This program is free software; you can redistribute it and/or modify it under the same terms as Perl itself.
See <http://www.perl.com/perl/misc/Artistic.html>
perl v5.18.2 2012-11-03 dynamic(3)