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Top Forums UNIX for Dummies Questions & Answers setting environment variable in awk Post 302304346 by tintin72 on Monday 6th of April 2009 07:37:15 AM
Old 04-06-2009
setting environment variable in awk

Dear all,

I have a data sample...

Code:
 
Dose: Summed 
ROI: Bladder
**************************
Bin        Dose      Volume
001       0.700     100.000
002       0.715      99.998
168       3.142       0.368
169       3.157       0.338
170       3.171       0.292
 
Dose: Summed 
ROI: Rectum
**************************
Bin        Dose      Volume
001       0.233     100.00
003       0.357      96.725
152       9.582       0.481

to select everything between the strings Bladder & Rectum, I use the command
Code:
awk '/Bladder/,/Rectum/' inputfile > outputfile

SmilieIt works. So far so good...my problem however is that this step is not the 1st stage in my code. The 1st stage requires the user to input all the organs of interest into an array using
Code:
read -a structure

therefore "Bladder" is defined by ${structure[0]} and "Rectum" as ${structure[1]}. But the command
Code:
awk '/$[structure[0]}/,/${structure[1]}/' inputfile > outputfile

gives an outputfile with zero entriesSmilie.

Can someone tell me what I am doing wrong? Thanks.
 

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BZZ(1)								   DjVuLibre-3.5							    BZZ(1)

NAME
bzz - DjVu general purpose compression utility. SYNOPSIS
Encoding: bzz -e[blocksize] inputfile outputfile Decoding: bzz -d inputfile outputfile DESCRIPTION
The first form of the command line (option -e) compresses the data from file inputfile and writes the compressed data into outputfile. The second form of the command line (option -d) decompressed file inputfile and writes the output to outputfile. OPTIONS
-d Decoding mode. -e[blocksize] Encoding mode. The optional argument blocksize specifies the size of the input file blocks processed by the Burrows-Wheeler trans- form expressed in kilobytes. The default block sizes is 2048 KB. The maximal block size is 4096 KB. Specifying a larger block size usually produces higher compression ratios and increases the memory requirements of both the encoder and decoder. It is use- less to specify a block size that is larger than the input file. ALGORITHMS
The Burrows-Wheeler transform is performed using a combination of the Karp-Miller-Rosenberg and the Bentley-Sedgewick algorithms. This is comparable to (Sadakane, DCC 98) with a slightly more flexible ranking scheme. Symbols are then ordered according to a running estimate of their occurrence frequencies. The symbol ranks are then coded using a simple fixed tree and the ZP binary adaptive coder (Bottou, DCC 98). The Burrows-Wheeler transform is also used in the well known compressor bzip2. The originality of bzz is the use of the ZP adaptive coder. The adaptation noise can cost up to 5 percent in file size, but this penalty is usually offset by the benefits of adaptation. PERFORMANCE
The following table shows comparative results (in bits per character) on the Canterbury Corpus ( http://corpus.canterbury.ac.nz ). The very good bzz performance on the spreadsheet file excl puts the weighted average ahead of much more sophisticated compressors such as fsmx. +-------------------------------------------------------------------------------------------------------------+ | Compression performance | | text fax csrc excl sprc tech poem html lisp man play Weighted Average | +-------------------------------------------------------------------------------------------------------------+ | compress 3.27 0.97 3.56 2.41 4.21 3.06 3.38 3.68 3.90 4.43 3.51 2.55 3.31 | | gzip -9 2.85 0.82 2.24 1.63 2.67 2.71 3.23 2.59 2.65 3.31 3.12 2.08 2.53 | | bzip2 -9 2.27 0.78 2.18 1.01 2.70 2.02 2.42 2.48 2.79 3.33 2.53 1.54 2.23 | | ppmd 2.31 0.99 2.11 1.08 2.68 2.19 2.48 2.38 2.43 3.00 2.53 1.65 2.20 | | fsmx 2.10 0.79 1.89 1.48 2.52 1.84 2.21 2.24 2.29 2.91 2.35 1.63 2.06 | | bzz 2.25 0.76 2.13 0.78 2.67 2.00 2.40 2.52 2.60 3.19 2.52 1.44 2.16 | +-------------------------------------------------------------------------------------------------------------+ Note that DjVu contributors have several entries in this table. Program compress was written some time ago by Joe Orost. Program ppmd is an improvement of the PPM-C method invented by Paul Howard. CREDITS
Program bzz was written by Leon Bottou <leonb@users.sourceforge.net> and was then improved by Andrei Erofeev <andrew_erofeev@yahoo.com>, Bill Riemers <docbill@sourceforge.net> and many others. SEE ALSO
djvu(1), compress(1), gzip(1), bzip2(1) DjVuLibre-3.5 10/11/2001 BZZ(1)
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