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Top Forums Programming Using General Data Structure Library (GDSL) Post 302294434 by usman_minhas on Thursday 5th of March 2009 07:13:22 AM
Old 03-05-2009
Using General Data Structure Library (GDSL)

Dear All,

I would appreciate if some one could please post a few examples using GDSL library. The library provides general data structure operations.

I am having confusion using list data structure regarding arguments.

Would appreciate your kind response.

with regards,
Usman
 

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Bio::Structure::Chain(3pm)				User Contributed Perl Documentation				Bio::Structure::Chain(3pm)

NAME
Bio::Structure::Chain - Bioperl structure Object, describes a chain SYNOPSIS
#add synopsis here DESCRIPTION
This object stores a Bio::Structure::Chain FEEDBACK
Mailing Lists User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to one of the Bioperl mailing lists. Your participation is much appreciated. bioperl-l@bioperl.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists Support Please direct usage questions or support issues to the mailing list: bioperl-l@bioperl.org rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible. Reporting Bugs Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the web: https://redmine.open-bio.org/projects/bioperl/ AUTHOR - Kris Boulez Email kris.boulez@algonomics.com APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _ new() Title : new() Usage : $struc = Bio::Structure::Chain->new( -id => 'human_id', -accession_number => 'AL000012', ); Function: Returns a new Bio::Structure::Chain object from basic constructors. Usually called from Bio::Structure::IO. Returns : a new Bio::Structure::Chain object residue() Title : residue Usage : Function: nothing useful until I get symbolic references to do what I want Returns : Args : add_residue() Title : add_residue Usage : Function: nothing useful until I get symbolic references to do what I want Returns : Args : model() Title : model Usage : Function: nothing useful until I get symbolic references to do what I want Returns : Args : id() Title : id Usage : $chain->id("chain B") Function: Gets/sets the ID for this chain Returns : the ID Args : the ID _remove_residues() Title : _remove_residues Usage : Function: Returns : Args : _remove_model() Title : _remove_model Usage : Function: Removes the Model this Chain is atttached to. Returns : Args : _grandparent() Title : _grandparent Usage : Function: get/set a symbolic reference to our grandparent Returns : Args : perl v5.14.2 2012-03-02 Bio::Structure::Chain(3pm)
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