Bio::Structure::Chain(3pm) User Contributed Perl Documentation Bio::Structure::Chain(3pm)
NAME
Bio::Structure::Chain - Bioperl structure Object, describes a chain
SYNOPSIS
#add synopsis here
DESCRIPTION
This object stores a Bio::Structure::Chain
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to one
of the Bioperl mailing lists. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHOR - Kris Boulez
Email kris.boulez@algonomics.com
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
new()
Title : new()
Usage : $struc = Bio::Structure::Chain->new(
-id => 'human_id',
-accession_number => 'AL000012',
);
Function: Returns a new Bio::Structure::Chain object from basic
constructors. Usually called from Bio::Structure::IO.
Returns : a new Bio::Structure::Chain object
residue()
Title : residue
Usage :
Function: nothing useful until I get symbolic references to do what I want
Returns :
Args :
add_residue()
Title : add_residue
Usage :
Function: nothing useful until I get symbolic references to do what I want
Returns :
Args :
model()
Title : model
Usage :
Function: nothing useful until I get symbolic references to do what I want
Returns :
Args :
id()
Title : id
Usage : $chain->id("chain B")
Function: Gets/sets the ID for this chain
Returns : the ID
Args : the ID
_remove_residues()
Title : _remove_residues
Usage :
Function:
Returns :
Args :
_remove_model()
Title : _remove_model
Usage :
Function: Removes the Model this Chain is atttached to.
Returns :
Args :
_grandparent()
Title : _grandparent
Usage :
Function: get/set a symbolic reference to our grandparent
Returns :
Args :
perl v5.14.2 2012-03-02 Bio::Structure::Chain(3pm)