02-22-2009
awk script for replacing 2 strings
Hi
I have written a script for automating a program. There is a string in 2 lines that needs altering from input.
The 2 lines are:
prepare_flexreceptor4.py -r rec_rigid.pdbqt -s TYR119_TRP312 -x rec_flex.pdbqt
and
prepare_flexdocking4.py -l ind.pdbqt -r rec_flex.pdbqt -s TYR119_TRP312
It is the TYR119_TRP312 bit that is important.
So I need a script that says 'enter flexible residues seperated by an underscore'. This should be put after the -s. It should accept 1 upwards values. The original script is FLXDOCK. Can this name be retained?
thanks
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ELZA(1) General Commands Manual ELZA(1)
NAME
elza -- script language for automating HTTP requests
SYNOPSIS
elza [scriptfile]
DESCRIPTION
The elza is a scripting language aimed at automating requests on web pages.
Scripts written in elza are capable of mimicking browser behavior almost perfectly, making it extremely difficult for remote servers to
distinguish their activity from the activity generated by ordinary users and browsers. This gives those scripts the opportunity to act upon
servers that will not respond to requests generated using netcat, gammaprog, rebol, or similar tool.
This manual page was written for the Debian GNU/Linux distribution because the original program does not have a manual page.
OPTIONS
scriptfile
The name and location of your script to be executed by elza.
Variables are specified either in the .elz script, or in elza.def
AUTHOR
This manual page was written by Stijn de Bekker stijn@debian.org for the Debian GNU/Linux system (but may be used by others).
Permission is granted to copy, distribute and/or modify this document under the terms of the GNU Free Documentation License, Version 1.1 or
any later version published by the Free Software Foundation; with no Invariant Sections, no Front-Cover Texts and no Back-Cover Texts. A
copy of the license can be found under /usr/share/common-licenses/FDL.
FILES
/etc/elza.def
Default values for various elza variables.
ELZA(1)