I would like to remove characters from column 7 so that from an input file looking like this:
>HWI-EAS422_12:4:1:69:89 GGTTTAAATATTGCACAAAAGGTATAGAGCGT U0 1 0 0 ref_chr8.fa 6527777 F DD
I get something like that in an output file:
... (13 Replies)
Hi all,
I'm new to Unix and work primarily in bioinformatics. I am in need of a script which will allow me to replace "1" with "chr1" in only the first column of a file which looks like such:
1 10327 rs112750067 T C . PASS ASP;RSPOS=10327;... (4 Replies)
I have a file which looks like this:
73450 articles and news developmental psychology 2006-03-30 16:22:40 1 http://www.usnews.com
73450 articles and news developmental psychology 2006-03-30 16:22:40 2 http://www.apa.org
73450 articles and news developmental psychology 2006-03-30... (1 Reply)
I have a file having the following entries:
test1 test2 test3
11 22 33
22 44 66
99 99 44
---
I want to add a column so that the above file becomes:
test1 test2 test3 notest
11 22 33 *
22 44 66 *
99 99 44 *
---
Thanks (6 Replies)
Hello,
I have this sentence :Pattern1 Pattern2 Pattern3 Pattern4-which-contains-HELLO-string-and-other-stuff-and-second-HELLO-and-third-HELLO
I want to delete everything between the 3rd tab (\t) and the FIRST pattern "HELLO" of the line.
Result expected is : Pattern1 ... (7 Replies)
Hi,
Can anyone please tell me about how we can delete an entire column from a tab delimited file?
Mu input_file.txt looks like this:
And I want the output as:
I used the below code
nawk -v d="1" 'BEGIN{FS=OFS="\t"}{$d=""}{print}' input_file.txtBut in the output, the first column is... (5 Replies)
I have tried the following to no avail.
xargs -n8 < test.txt
awk '{if(NR%6!=0){p=""}else{p="\n"};printf $0" "p}' Mod_Alm_log.txt > test.txt
I have tried different variations of the above, the problem is mixes lines together.
And it includes the tags "%a and %A" I need them to be all tab... (16 Replies)
input
"A","B","C,D","E","F"
"S","T","U,V","W","X"
"AA","BB","CC,DD","EEEE","FFF"
required output:
"A","B","C,D","C,D","F"
"S", T","U,V","U,V","X"
"AA","BB","CC,DD","CC,DD","FFF"
tried using awk but double quotes not preserving for every field. any help to solve this is much... (5 Replies)
Hello Everyone..
I want to replace the retail col from FileI with cstp1 col from FileP if the strpno matches in both files
FileP.txt
... (2 Replies)
Discussion started by: YogeshG
2 Replies
LEARN ABOUT OSF1
trbsd
trbsd(1) General Commands Manual trbsd(1)NAME
trbsd - Translates characters
SYNOPSIS
trbsd [-Acs] string1 string2
trbsd -d [-Ac] string1
The trbsd command copies characters from the standard input to the standard output with substitution or deletion of selected characters.
OPTIONS
Translates on a byte-by-byte basis. When you specify this option, trbsd does not support extended characters. Complements (inverts) the
set of characters in string1 with respect to the universe of characters whose codes are 001 through 377 octal if you specify -A, and all
characters if you do not specify -A. Deletes all characters in string1 from output. Changes characters that are repeated output charac-
ters in string2 into single characters.
DESCRIPTION
Input characters from string1 are replaced with the corresponding characters in string2. The trbsd command cannot handle an ASCII NUL
( 00) in string1 or string2; it always deletes NUL from the input.
The tr command is a System V compatible version of trbsd.
Abbreviations such as a-z, standing for a string of characters whose ASCII codes run from character a to character z, inclusive, can be
used to introduce ranges of characters. Note that brackets are not special characters.
Use the escape character (backslash) to remove the special meaning from any character in a string. Use the followed by 1, 2, or 3
octal digits for the code of a character.
If a given character appears more than once in string1, the character in string2 corresponding to its last appearance in string1 will be
used in the translation.
EXAMPLES
To translate braces into parentheses, enter: trbsd '{}' '()' <textfile >newfile
This translates each { (left brace) to a ( (left parenthesis) and each } (right brace) to a ) (right parenthesis). All other char-
acters remain unchanged. To translate lowercase ASCII characters to uppercase, enter: trbsd a-z A-Z <textfile >newfile The two
strings can be of different lengths: trbsd 0-9 # <textfile >newfile
This translates each digit to a # (number sign); if string2 is too short, it is padded to the length of string1 by duplicating its
last character. To translate each string of digits to a single # (number sign), enter: trbsd -s 0-9 # <textfile >newfile To trans-
late all ASCII characters that are not specified, enter: trbsd -c ' -~' 'A-_' <textfile >newfile
This translates each nonprinting ASCII character to the corresponding control key letter ( 01 translates to A, 02 to B, and so
on). ASCII DEL (177), the character that follows ~ (tilde), translates to a ? (question mark).
SEE ALSO
Commands: ed(1), sh(1), tr(1)
Files: ascii(5)trbsd(1)