09-28-2008
Oh yea, and I have to make sure I don't run this command on the Column Headers....
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1. Shell Programming and Scripting
I would like to remove characters from column 7 so that from an input file looking like this:
>HWI-EAS422_12:4:1:69:89 GGTTTAAATATTGCACAAAAGGTATAGAGCGT U0 1 0 0 ref_chr8.fa 6527777 F DD
I get something like that in an output file:
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2. Shell Programming and Scripting
Hi all,
I'm new to Unix and work primarily in bioinformatics. I am in need of a script which will allow me to replace "1" with "chr1" in only the first column of a file which looks like such:
1 10327 rs112750067 T C . PASS ASP;RSPOS=10327;... (4 Replies)
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3. UNIX for Dummies Questions & Answers
How do I use awk to log transform the fifth column of a tab-delimited text file? Thanks! (1 Reply)
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4. Shell Programming and Scripting
I have a file which looks like this:
73450 articles and news developmental psychology 2006-03-30 16:22:40 1 http://www.usnews.com
73450 articles and news developmental psychology 2006-03-30 16:22:40 2 http://www.apa.org
73450 articles and news developmental psychology 2006-03-30... (1 Reply)
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5. UNIX for Dummies Questions & Answers
I have a file having the following entries:
test1 test2 test3
11 22 33
22 44 66
99 99 44
---
I want to add a column so that the above file becomes:
test1 test2 test3 notest
11 22 33 *
22 44 66 *
99 99 44 *
---
Thanks (6 Replies)
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6. Shell Programming and Scripting
Hello,
I have this sentence :Pattern1 Pattern2 Pattern3 Pattern4-which-contains-HELLO-string-and-other-stuff-and-second-HELLO-and-third-HELLO
I want to delete everything between the 3rd tab (\t) and the FIRST pattern "HELLO" of the line.
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7. Shell Programming and Scripting
Hi,
Can anyone please tell me about how we can delete an entire column from a tab delimited file?
Mu input_file.txt looks like this:
And I want the output as:
I used the below code
nawk -v d="1" 'BEGIN{FS=OFS="\t"}{$d=""}{print}' input_file.txtBut in the output, the first column is... (5 Replies)
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8. UNIX for Dummies Questions & Answers
I have tried the following to no avail.
xargs -n8 < test.txt
awk '{if(NR%6!=0){p=""}else{p="\n"};printf $0" "p}' Mod_Alm_log.txt > test.txt
I have tried different variations of the above, the problem is mixes lines together.
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9. Shell Programming and Scripting
input
"A","B","C,D","E","F"
"S","T","U,V","W","X"
"AA","BB","CC,DD","EEEE","FFF"
required output:
"A","B","C,D","C,D","F"
"S", T","U,V","U,V","X"
"AA","BB","CC,DD","CC,DD","FFF"
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10. UNIX for Beginners Questions & Answers
Hello Everyone..
I want to replace the retail col from FileI with cstp1 col from FileP if the strpno matches in both files
FileP.txt
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LEARN ABOUT DEBIAN
dpkg-awk
DPKG-AWK(1) General Commands Manual DPKG-AWK(1)
NAME
dpkg-awk - Utility to read a dpkg style db file
SYNOPSIS
dpkg-awk [(-f|--file) filename] [(-d|--debug) ##] [(-s|--sort) list] [(-rs|--rec_sep) ??] '<fieldname>:<regex>' ... -- <out_fieldname> ..
DESCRIPTION
dpkg-awk Parses a dpkg status file (or other similarly formatted file) and outputs the resulting records. It can use regex on the field
values to limit the returned records, it can also be told which fields to output, and it can sort the matched fields.
OPTIONS
-f filename
--file filename
The file to parse. The default is /var/lib/dpkg/status.
-d [#]
--debug [#]
Each time this is specified, it increased the debug level.
-s field(s)
--sort field(s)
A space or comma separated list of fields to sort on.
-n field(s)
--numeric field(s)
A space or comma separated list of fields that should be interpreted as numeric in value.
-rs ??
--rec_sep ??
Output this string at the end of each output paragraph.
-h
--help Display some help.
fieldname
The fields from the file, that are matched with the regex given. The fieldnames are case insensitive.
out_fieldname
The fields from the file, that are output for each record. If the first field listed begins with ^, then the list of fields that
follows will NOT be output.
BUGS
Be warned that the author has only a shallow understanding of the dpkg packaging system, so there are probably tons of bugs in this pro-
gram.
This program comes with no warranties. If running this program causes fire and brimstone to rain down upon the earth, you will be on your
own.
This program accesses the dpkg database directly in places, querying for data that cannot be gotten via dpkg.
AUTHOR
Adam Heath <doogie@debian.org>
DEBIAN
Debian Utilities DPKG-AWK(1)