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Top Forums Shell Programming and Scripting performance issue using gzcat, awk and sort Post 302240023 by era on Thursday 25th of September 2008 12:59:30 AM
Old 09-25-2008
Quote:
Originally Posted by naoseionome
- when lines in each file exceeds a few millions "NR" instead of having the normal number, so i can apply sort, it gets in scientific notation and I'm not able to guarantee the lines order;
That's really pesky. You can avoid the scientific format with printf but if the line numbers exceed the capacity of the data type used internally by awk for integers, the output will be bogus.

Code:
borkstation$ awk 'END { print 123456789123456 }' /dev/null
1.23457e+14
borkstation$ awk 'END { printf "%i\n", 123456789123456 }' /dev/null
2147483647
borkstation$ perl -le 'print 123456789123456'
123456789123456

So the only workaround I can suggest is to switch to Perl in order to solve this. There is a script a2p in the Perl distribution which can convert awk scripts to Perl scripts, although I hear it's not perfect.

Quote:
Originally Posted by naoseionome
- the server as a I/0 charge very big so i should be able to do all the process only in memory (there are processors without charge and memory).
I'm sorry, I can't find a question in that. Can you rephrase?

Quote:
Originally Posted by naoseionome
- can i receive the several gzcat input into only one awk script? or it is not possible?
The scripts seem to be different for each file, so it seems a bit dubious. Certainly you could try to refactor the code to reduce duplication. It seems hard to write an awk script which could decide which fields to select purely based on the looks of the input (remember, file names are not visible when you receive data from a pipe), but if you know how to do that, by all means give it a try. Perhaps you could marshal the output from gzcat into a form where you can also include headers with information about which field numbers to use, or something. (Think XML format, although you don't have to use the specifics of XML, of course. Something simple like a prefix on each line which says which fields to look at is probably a lot easier to code and understand.)

Quote:
Originally Posted by naoseionome
- can i use pipe to send the previous result to the next instruction without writing to the "final" file?
Group the commands into a subshell and pipe the output from that shell to sort.

Code:
( awk one; awk too; awk some more ) | sort

Quote:
Originally Posted by naoseionome
- when it gets to sort instruction I/0 use goes from 30% to 100% and memory use stays the same, why?
sort uses temporary files if the inputs are big.
 

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